Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00017 ATGGAGCAGTATGAAATTCTAGAGCAGATTGGCAAAGGTGCCTTTGGTTCTGCTCTTCTTGTCAAGCACAGGCATGAAAAGAAAAAATATGTCCTCAAGAAGATTCGCCTTGCTCGCCAGACCGACAGAGCCCGTAGATCTGCCCACCAGGAGATGGAGATTGTATCTAAAGTTCACAATCCATTTATAGTGGAGTATAAAGATTCCTGGGTAGAAAGGGGTTGTTTTGTATGTATTGTCATAAGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTTATTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTGCTAATGGCACTTGATTACTTGCATGTAAATCATATACTTCATAGAGATGTCAAGTGCTCAAATATATTCTTTACAAAAGATCGAGACATCCGTCTAGGTGACTTTGGTCTTGCAAAGATGTTGACATCTGATGATCTTGCTTCTTCAGTTGTTGGGACCCCAACTTATATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGTTCTAAGTCAGACATCTGGTCTTTGGGATGCTGTATTTATGAAATGGCTGCACACAAGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGTCTCCACTTCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTGAAGAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCAACTGCTGGTGAGTTACTGAATCATCCACATCTTCAGCCTTACATTCATAAAATTCAGCTACAACTAAGTAGCCCCAGGAGAAGTAGTACTTTTGCATTTCAATGGGCTGAGAAATACTATGTAAGGAGAAGTAGGTTCATAGAGCCGGAATCTATTTCTTCTCTTTCTGGCAAAGACAAATGCTTGTCATTAAGCAATGACAACAGCAGGTCCTTGAATCCAAGTGTTTCTGTAACTGATGAACTACAAGGATCTCAGTGTTCTTCTACTCAAAGAGCAATTGGATCATCTTCCAGTTATTCAAAAGAGAAGCTCTATGAACTATCTGTTGCCTGTGTCCATGACAACTGCAATACTTATAAATTATCAAAAGCTAGAAAGTCCTCAATTGTTCAGAGACCTTCAAGACTGAGAACTGCTAAGGATTCTGCCACCCCCAGAGGCCAGAAAATGACACCATCTAGGACAGAACATATCAGTTCAAAGCGTGTTTCACACACAATGCCTAATGCACCAACTCGTAGAGCATCCATTCCACCACCAACTAAAGCTAACGTTGGCCTTCTCCAGTGTGTGGAGTCACCTGATGTCTCGGTTAACGCTCCAAGAATCGATAAGATTGCAGAGTTCCCTCTGCCCTCGTATGAGGATCATTTCTTCACTGCCAAGGTACCATCCCCATCCCCATCACCATCACCATCACCAACATCAACCACCAGCGAGGAGAAGTGCATGATCCAGGTTGTGGACAAAGCAACTGTCCACAACACTAACAGTGAACATTCTGCTGATGATCATAAGCATCGATTCGACACCTCTTCATTGCAGCAACGGGCAGAGGCATTGGAAGGGCTGCTAGAGTTCAGTGCAAGGCTGCTCCAACAAAACAGGTTTGATGAACTTGGAGTGTTGCTCAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAAAGCTTCAAAGAAACTCTTCTATAA 1737 0.4249 MEQYEILEQIGKGAFGSALLVKHRHEKKKYVLKKIRLARQTDRARRSAHQEMEIVSKVHNPFIVEYKDSWVERGCFVCIVISYCEGGDMAEAIKKANGVYFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFFTKDRDIRLGDFGLAKMLTSDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVSPLPTMYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYIHKIQLQLSSPRRSSTFAFQWAEKYYVRRSRFIEPESISSLSGKDKCLSLSNDNSRSLNPSVSVTDELQGSQCSSTQRAIGSSSSYSKEKLYELSVACVHDNCNTYKLSKARKSSIVQRPSRLRTAKDSATPRGQKMTPSRTEHISSKRVSHTMPNAPTRRASIPPPTKANVGLLQCVESPDVSVNAPRIDKIAEFPLPSYEDHFFTAKVPSPSPSPSPSPTSTTSEEKCMIQVVDKATVHNTNSEHSADDHKHRFDTSSLQQRAEALEGLLEFSARLLQQNRFDELGVLLKPFGPEKVSPRETAIWLAKSFKETLL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00017 578 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc17g00017 578 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc17g00017 578 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 534 - -
Stsc17g00017 578 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Stsc17g00017 578 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Stsc17g00017 578 MobiDBLite consensus disorder prediction 313 341 - -
Stsc17g00017 578 Gene3D Transferase(Phosphotransferase) domain 1 86 303 - -
Stsc17g00017 578 SUPERFAMILY Protein kinase-like (PK-like) 1 318 IPR011009 -
Stsc17g00017 578 FunFam Serine/threonine-protein kinase Nek3 86 336 - -
Stsc17g00017 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc17g00017 578 CDD STKc_Nek 3 258 - -
Stsc17g00017 578 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc17g00017 578 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc17g00017 578 MobiDBLite consensus disorder prediction 375 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00017 Stsc-Chr17 94898 98366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00017 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 9.24e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc17g00017 Pkinase 3.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00017 K08857 - gmx:100810347 795.423