LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc17g00017	ATGGAGCAGTATGAAATTCTAGAGCAGATTGGCAAAGGTGCCTTTGGTTCTGCTCTTCTTGTCAAGCACAGGCATGAAAAGAAAAAATATGTCCTCAAGAAGATTCGCCTTGCTCGCCAGACCGACAGAGCCCGTAGATCTGCCCACCAGGAGATGGAGATTGTATCTAAAGTTCACAATCCATTTATAGTGGAGTATAAAGATTCCTGGGTAGAAAGGGGTTGTTTTGTATGTATTGTCATAAGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTTATTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTGCTAATGGCACTTGATTACTTGCATGTAAATCATATACTTCATAGAGATGTCAAGTGCTCAAATATATTCTTTACAAAAGATCGAGACATCCGTCTAGGTGACTTTGGTCTTGCAAAGATGTTGACATCTGATGATCTTGCTTCTTCAGTTGTTGGGACCCCAACTTATATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGTTCTAAGTCAGACATCTGGTCTTTGGGATGCTGTATTTATGAAATGGCTGCACACAAGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGTCTCCACTTCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTGAAGAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCAACTGCTGGTGAGTTACTGAATCATCCACATCTTCAGCCTTACATTCATAAAATTCAGCTACAACTAAGTAGCCCCAGGAGAAGTAGTACTTTTGCATTTCAATGGGCTGAGAAATACTATGTAAGGAGAAGTAGGTTCATAGAGCCGGAATCTATTTCTTCTCTTTCTGGCAAAGACAAATGCTTGTCATTAAGCAATGACAACAGCAGGTCCTTGAATCCAAGTGTTTCTGTAACTGATGAACTACAAGGATCTCAGTGTTCTTCTACTCAAAGAGCAATTGGATCATCTTCCAGTTATTCAAAAGAGAAGCTCTATGAACTATCTGTTGCCTGTGTCCATGACAACTGCAATACTTATAAATTATCAAAAGCTAGAAAGTCCTCAATTGTTCAGAGACCTTCAAGACTGAGAACTGCTAAGGATTCTGCCACCCCCAGAGGCCAGAAAATGACACCATCTAGGACAGAACATATCAGTTCAAAGCGTGTTTCACACACAATGCCTAATGCACCAACTCGTAGAGCATCCATTCCACCACCAACTAAAGCTAACGTTGGCCTTCTCCAGTGTGTGGAGTCACCTGATGTCTCGGTTAACGCTCCAAGAATCGATAAGATTGCAGAGTTCCCTCTGCCCTCGTATGAGGATCATTTCTTCACTGCCAAGGTACCATCCCCATCCCCATCACCATCACCATCACCAACATCAACCACCAGCGAGGAGAAGTGCATGATCCAGGTTGTGGACAAAGCAACTGTCCACAACACTAACAGTGAACATTCTGCTGATGATCATAAGCATCGATTCGACACCTCTTCATTGCAGCAACGGGCAGAGGCATTGGAAGGGCTGCTAGAGTTCAGTGCAAGGCTGCTCCAACAAAACAGGTTTGATGAACTTGGAGTGTTGCTCAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAAAGCTTCAAAGAAACTCTTCTATAA	1737	0.4249	MEQYEILEQIGKGAFGSALLVKHRHEKKKYVLKKIRLARQTDRARRSAHQEMEIVSKVHNPFIVEYKDSWVERGCFVCIVISYCEGGDMAEAIKKANGVYFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFFTKDRDIRLGDFGLAKMLTSDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVSPLPTMYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYIHKIQLQLSSPRRSSTFAFQWAEKYYVRRSRFIEPESISSLSGKDKCLSLSNDNSRSLNPSVSVTDELQGSQCSSTQRAIGSSSSYSKEKLYELSVACVHDNCNTYKLSKARKSSIVQRPSRLRTAKDSATPRGQKMTPSRTEHISSKRVSHTMPNAPTRRASIPPPTKANVGLLQCVESPDVSVNAPRIDKIAEFPLPSYEDHFFTAKVPSPSPSPSPSPTSTTSEEKCMIQVVDKATVHNTNSEHSADDHKHRFDTSSLQQRAEALEGLLEFSARLLQQNRFDELGVLLKPFGPEKVSPRETAIWLAKSFKETLL	578

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc17g00017	578	ProSiteProfiles	Protein kinase domain profile.	4	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc17g00017	578	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
Stsc17g00017	578	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	534	-	-
Stsc17g00017	578	Gene3D	Phosphorylase Kinase; domain 1	1	83	-	-
Stsc17g00017	578	FunFam	Serine/threonine-protein kinase Nek2	1	83	-	-
Stsc17g00017	578	MobiDBLite	consensus disorder prediction	313	341	-	-
Stsc17g00017	578	Gene3D	Transferase(Phosphotransferase) domain 1	86	303	-	-
Stsc17g00017	578	SUPERFAMILY	Protein kinase-like (PK-like)	1	318	IPR011009	-
Stsc17g00017	578	FunFam	Serine/threonine-protein kinase Nek3	86	336	-	-
Stsc17g00017	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc17g00017	Stsc-Chr17	94898	98366	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc17g00017	10	259	MAP Kinase Kinase Kinase	AT1G53570	31.765	9.24e-37	142

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Stsc17g00017		Pkinase	3.4e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc17g00017	K08857		-	gmx:100810347	795.423

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