Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00011 ATGAACTATCTGTACCCGGTGAAAGAAGAGTACCTGGAGGAACCTTCCTCATCGTCCACATTTCCAATTTCGGTTGAAAATGAGGAGATGAGGATGGTTCCTCCACCGCAGCCAATGGAGGGGCTCCACGAAGTGGGGCCACCTCCATTCCTGACGAAGACGTTCGAGGCCGTGGAGGATCCAGCCACAGACCACATAGTGTCGTGGAGCCGAAGCGGCACAAGCTTCGTGGTTTGGGATCCGCATGCCTTCTCTCGAGGGCTCCTTCCGAGATATTTCAAGCATAACAACTTCTCCAGCTTCGTAAGGCAGCTCAATACTTACGGTTTTAGAAAGATTGATCCAGATAAATGGGAATTTGCTAATGAAGGCTTTGTGAGGGGCCACAGACACCTATTAGCCACCATAAGGAGAAGGAAGGCGCCGCCGCCACCCATCCAAACGCAAGTAGCTTCACAGTCGCAGCAGGGTCACTGCCTCGAATTAGGGCGGTTCGGATTGGACCAAGAGATCGATCGGTTGAGGCGCGACAAGCAGGTGTTGATGATGGAGCTTGTGAGGCTTAGACAGCAGCAACAAACAACGAGATCGTATCTTGAGACAATGGAGCAAAGGCTTAAAGCTACTGAGATGAAGCAGCAACAGATGATGGCCTTCTTGGCCAAAGCAATGAAGAACCCCTTGTTTATACAGCAACTCATACAGCAAAAGGAGAAGAGGAAGGAGCTCGAGGATGCCATCACCAAGAAGAGGAGGAGGCCCATTGACCAAGGGGGCCCAAGTTGCAGCACTGTCAAGGTTGAGAATCCAGCAGAGTTTGGTGGATATGGTGGTGGTGAGTTTGGGGTTTCTGAGCTTCAAGTTCTGGCTTTGGAGATGCAAGGTTATGGTAGAGGGAGGAGAGAGAGTGAGAGTGAGCATGATGAGCATGAACAAGAGAGGCTTGACAAGGAGCTTGACGATGAAGGCTTCTGGGAAGAGTTGTTCAGTGAGCATTATTATGAGGGTGAAATGGACATTTCACAAGATGAAGAAGAGGATGTTAATGTATTGACAAATCGGATGGGTTACTTGGGTAGTTCAAGTCCTAAGTGA 1095 0.4968 MNYLYPVKEEYLEEPSSSSTFPISVENEEMRMVPPPQPMEGLHEVGPPPFLTKTFEAVEDPATDHIVSWSRSGTSFVVWDPHAFSRGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFVRGHRHLLATIRRRKAPPPPIQTQVASQSQQGHCLELGRFGLDQEIDRLRRDKQVLMMELVRLRQQQQTTRSYLETMEQRLKATEMKQQQMMAFLAKAMKNPLFIQQLIQQKEKRKELEDAITKKRRRPIDQGGPSCSTVKVENPAEFGGYGGGEFGVSELQVLALEMQGYGRGRRESESEHDEHEQERLDKELDDEGFWEELFSEHYYEGEMDISQDEEEDVNVLTNRMGYLGSSSPK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00011 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 268 IPR027725 -
Stsc17g00011 364 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc17g00011 364 Coils Coil 300 320 - -
Stsc17g00011 364 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc17g00011 364 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc17g00011 364 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc17g00011 364 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc17g00011 364 MobiDBLite consensus disorder prediction 297 323 - -
Stsc17g00011 364 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc17g00011 364 FunFam Heat shock transcription factor 1 43 140 - -
Stsc17g00011 364 Gene3D - 43 140 IPR036388 -
Stsc17g00011 364 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Stsc17g00011 364 Coils Coil 171 191 - -
Stsc17g00011 364 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00011 Stsc-Chr17 69217 72088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00011 36 362 HSF AT3G22830 53.425 2.82e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc17g00011 HSF_DNA-bind 6.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00011 K09419 - gmx:100794264 491.886