Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00007 ATGTCCAGCTCCAGCAGTTCACTTATCATTGACCTGGCCAACACCATTACCAGACTCACTTCTCCACCATTAACATCACCTAAACAACGCTGGCGTTTTGCTTATACAAAAATCTATTCTACAAGAGTATTTGTTTCCCTTGCCCAAGAGATCATCTCCAAACGAAATCACTACACTAAACTATTTGAAACTACTCACTCTTCCACTTCCTTGCTCCTTGTTCCTCATGATGATGATAAATCAAAGCTTATTCACATGGTGAAGGACAAAAGCTTGGACTCTCTTGCTTCCTTTGGAGGCGTCCAAGGTGTAGCTTACGTCATTGGAACTGTTCCATCAAAGGGAATTGATGACAAACAAGAAGAAATTTCCAAGCGTCGCGACATATTTGGATCCAACACTTACCCTCGTCCACCGCCGAAAGGGCTCCTCCACTTTGTTATTGAAGCCTTCAATGACACCACCATAATCATCCTTCTTGTTTGCGCGGGGCTTTCTCTCGGCTTCGGAATCAAACAGCACGGTGCAGGGGAAGGTTGGTATGAAGGTGGCAGCATATTCTTGGCGGTGTTCTTGGTTGTTGTTGTAAGCTCACTCAGCAACTTGAGGCAGGAGAGGCAGTTTCACAAGCTCTCTAAGATTAGCAGTGATATCAAGGTTCATCTTATCAGGAATGGAAGGCCGCACCAGATTTCCATCTTCGAGGTTCTTGTGGGAGATATCGTGTCTCTCAAGATTGGTGATCAAGTCCCTGCTGATGGATTGTTCATATCAGGTCATTCTCTTCATGTTGATGAGTCAAGCATGACAGGGGAGAGTGATCATCTTCAGATTGATCCCTTCAAGAGTCCTTTCTTGTTGTCCGGGGCCAAAGTTGTGGACGGTTATGCAACCATGATGGTCACCTCCGTCGGAACCAACACCGCCTGGGGACAGTTGATGAGCACTGTATCAAGAGGTGACACGGAGGAGAGGACGCCGTTGCAGGCACGTCTTGATAACTTGACCACATCCATTGGTAAAGCAGGCCTTGCTGTTGCCTTCCTTGTGTTTGTTGTAATGCTTATTCGTTATTTCACTGGAAACACTAGCAGTGAGGATGGTTATACAGAGTTCAAGAGAGGTACTACTGATTTGGATGATGTGTTCAATGCTGTTGTCAAGATCATTGCGGTTGCAGTCACCATTGTGGTTGTCGCCATCCCGGAAGGATTGCCCTTGGCTGTCACTCTCACATTGGCTTATTCCATGAAGAGAATGATGGCGGATCAGGCTATGGTGAGGAAACTCTCTGCTTGCGAAACTATGGGCTCAGCAACGGTTATATGCACTGATAAAACTGGGACTCTCACTCTCAATGAGATGAGAGTCAACAAGTTCTGGTTAGGCCTAGAAAACATCATTGACAATTATTCCAATGCAATGGCCCAGAATGTTGTGCGATTGTTCCACCAGGGAATAGGCCTCAATACAACCGGCACTGTATATAAGCCTTCGCCGGAATCTGAGCCTGAAATCTCTGGTAGCCCTACAGAGAAAGCTATTCTCTTGTGGGCTGTATCGGATTTAGGCATGGACATGGATGAACTAAAGAAGAAGCACGAGATCATCCATGTTGAAACGTTTAACTCGGAGAAGAAACGAAGCGGGGTAGCAGTAAGGAAGAAGGGTGACAACACGGTACATGTGCATTGGAAAGGGGCTGCTGAGATGATACTTGCAATGTGTTGTAATTACATTGATTGCAATGGCACAGAGCAGTCCCTTGGTGAAAAAGAACGAGATGAAATCGAGAAAATCATTCAGGGAATGGCGGCTAGTAGCCTAAGATGCATTGCTTTTGCTCACATTGAAATGGAACAGAGCGAGGATAAGGTACTGAGAGAAGATGGCTTGAAATTGCTAGGAATCGTTGGCCTTAAGGATCCATGCCGGCCGGAAGTCAAGAAGGCTGTGGAAACTTGCAAATATGCGGGTGTTGATATCAAGATGATCACCGGAGATAACATATTCACAGCAAAGGCAATAGCAACAGAATGTGGAATATTAGACCTTAGTAATGATGTAGCCAAGGGACAAGTTGTTGAAGGTGAGGAATTTCGGAACTACACGGAGGAAGAGAGAATGGAGAAAGTAGATGATATTCGAGTGATGGCGAGATCTTCTCCTATGGACAAACATTTGATGGTGCAATGCTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGAGATGGTACCAACGATGCGCCTGCTCTAAAAGAAGCTGATATTGGACTTTCCATGGGAATCCAAGGCACTGAAGTTGCCAAGGAAAGTTCTGACATCGTTATCTTGGATGACAACTTCAATTCTGTTGCAACGGTTTTAAGGTGGGGAAGATGTGTGTATAACAATATACAGAAATTTATCCAATTTCAACTAACAGTGAATGTTGCAGCACTTGTCATAAATTTTATTGCTGCAGTTTCTGCTGGTGATGTTCCCTTAACAACAGTTCAACTTCTTTGGGTTAATCTCATTATGGATACTCTAGGTGCTCTAGCCTTGGCCACAGAACGGCCTACAAAGGAGTTAATGGAGAAACGGCCGGTGGGTCGAACCGAGCCGCTTATCACTAACATTATGTGGAGAAACCTTTTAACTCAGGCTTTGTATCAGATTGCTATCTTATTGGTTTTCCAATTCAAAGGGAAGGCAATATTCAATGTAGATGAGAAGGTGAAGAACACACTAATTTTCAATACTTTTGTTCTGTGCCAAGTTTTCAATGAGTTCAACTCTAGGAGTATGGAGAAACATAATGTGTTCAGAGGCATTCACAGAAACCACTTGTTCCTTGGAATTGTTGGGATCACAATTGTTCTTCAAATTGCAATGGTGGAATTCCTGAGGAAGTTTGCTGATACAGAGAGATTAACATGGATTCAATGGGGATTTTGTGTTTTATTTGCAGCTGTGTCATGGCCACTTGCTTGGTTTGTAAAGCTAATTCATGTTCCAGATAAGCCATTTTTCAGCTTCAAGATTAAGCGGTCTTGTTAG 3045 0.4391 MSSSSSSLIIDLANTITRLTSPPLTSPKQRWRFAYTKIYSTRVFVSLAQEIISKRNHYTKLFETTHSSTSLLLVPHDDDKSKLIHMVKDKSLDSLASFGGVQGVAYVIGTVPSKGIDDKQEEISKRRDIFGSNTYPRPPPKGLLHFVIEAFNDTTIIILLVCAGLSLGFGIKQHGAGEGWYEGGSIFLAVFLVVVVSSLSNLRQERQFHKLSKISSDIKVHLIRNGRPHQISIFEVLVGDIVSLKIGDQVPADGLFISGHSLHVDESSMTGESDHLQIDPFKSPFLLSGAKVVDGYATMMVTSVGTNTAWGQLMSTVSRGDTEERTPLQARLDNLTTSIGKAGLAVAFLVFVVMLIRYFTGNTSSEDGYTEFKRGTTDLDDVFNAVVKIIAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNEMRVNKFWLGLENIIDNYSNAMAQNVVRLFHQGIGLNTTGTVYKPSPESEPEISGSPTEKAILLWAVSDLGMDMDELKKKHEIIHVETFNSEKKRSGVAVRKKGDNTVHVHWKGAAEMILAMCCNYIDCNGTEQSLGEKERDEIEKIIQGMAASSLRCIAFAHIEMEQSEDKVLREDGLKLLGIVGLKDPCRPEVKKAVETCKYAGVDIKMITGDNIFTAKAIATECGILDLSNDVAKGQVVEGEEFRNYTEEERMEKVDDIRVMARSSPMDKHLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKRPVGRTEPLITNIMWRNLLTQALYQIAILLVFQFKGKAIFNVDEKVKNTLIFNTFVLCQVFNEFNSRSMEKHNVFRGIHRNHLFLGIVGITIVLQIAMVEFLRKFADTERLTWIQWGFCVLFAAVSWPLAWFVKLIHVPDKPFFSFKIKRSC 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00007 1014 FunFam Calcium-transporting ATPase 760 1002 - -
Stsc17g00007 1014 Pfam haloacid dehalogenase-like hydrolase 441 757 - -
Stsc17g00007 1014 SFLD p-type atpase 425 796 IPR044492 -
Stsc17g00007 1014 Pfam E1-E2 ATPase 218 421 - -
Stsc17g00007 1014 Gene3D - 149 997 - -
Stsc17g00007 1014 PRINTS H+-transporting ATPase (proton pump) signature 743 759 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc17g00007 1014 PRINTS H+-transporting ATPase (proton pump) signature 775 800 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc17g00007 1014 PRINTS H+-transporting ATPase (proton pump) signature 597 615 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc17g00007 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 445 451 IPR018303 -
Stsc17g00007 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 99 999 IPR023298 -
Stsc17g00007 1014 CDD P-type_ATPase_Ca_PMCA-like 123 876 - -
Stsc17g00007 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 449 648 IPR023299 GO:0000166
Stsc17g00007 1014 NCBIfam HAD-IC family P-type ATPase 714 823 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc17g00007 1014 NCBIfam HAD-IC family P-type ATPase 384 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc17g00007 1014 NCBIfam calcium-translocating P-type ATPase, PMCA-type 84 999 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc17g00007 1014 FunFam Calcium-transporting ATPase 453 643 - -
Stsc17g00007 1014 SMART Cation_ATPase_N_a_2 97 171 IPR004014 -
Stsc17g00007 1014 SUPERFAMILY Calcium ATPase, transduction domain A 218 317 IPR008250 -
Stsc17g00007 1014 FunFam Calcium-transporting ATPase 195 318 - -
Stsc17g00007 1014 Pfam Cation transporting ATPase, C-terminus 828 998 IPR006068 -
Stsc17g00007 1014 Pfam Cation transporter/ATPase, N-terminus 99 166 IPR004014 -
Stsc17g00007 1014 PRINTS P-type cation-transporting ATPase superfamily signature 636 647 - -
Stsc17g00007 1014 PRINTS P-type cation-transporting ATPase superfamily signature 658 668 - -
Stsc17g00007 1014 PRINTS P-type cation-transporting ATPase superfamily signature 265 279 - -
Stsc17g00007 1014 PRINTS P-type cation-transporting ATPase superfamily signature 767 779 - -
Stsc17g00007 1014 PRINTS P-type cation-transporting ATPase superfamily signature 443 457 - -
Stsc17g00007 1014 PRINTS P-type cation-transporting ATPase superfamily signature 743 762 - -
Stsc17g00007 1014 FunFam Calcium-transporting ATPase 638 788 - -
Stsc17g00007 1014 Gene3D - 453 643 IPR023299 GO:0000166
Stsc17g00007 1014 PANTHER CATION TRANSPORTING ATPASE 78 1000 - -
Stsc17g00007 1014 Gene3D - 120 318 - -
Stsc17g00007 1014 Gene3D - 440 788 IPR023214 -
Stsc17g00007 1014 SFLD Haloacid Dehalogenase 425 796 - -
Stsc17g00007 1014 SUPERFAMILY HAD-like 441 848 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00007 Stsc-Chr17 32554 35675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00007 28 1013 Primary Pumps ATPases AT3G63380 67.932 0.0 1321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00007 K01537 - gmx:100790034 1509.58