Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00004 ATGGTGATGGGTTTGGAAAAGGATCCTCATGTGTTTTTAGATGTCTCAATTGGTGGGGACCCTGTGGAAAGAATTGTAATACAGCTTTTTGCTGGTGTTGTTCCCAAGACAGCTGAGAATTTTCGGGCACTCTGTACAGGTGAGAAGGGTATTGGTGCATCCACTGCCAAACCTCTGCATTATAAAGGAACAAGTTTTCATCGTATAATTAAAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAGGGGTAATGGCACTGGTGGGGAAAGTATATATGGAGGAAAATTTGCAGATGAAAATTTCAAACTATCACATGATGGACCTGGTTTTCTTTCCATGGCTAATAGTGGAGCTAACACAAATGGGTCTCAGTTCTTTATTACCTTTAAGCGCCAACCACATCTTGATGGAAAACATGTCGTTTTTGGAAAAGTTGTCTCGGGAATGGACATTCTGAAGAAAATTGAGCTGGTGGGATCTTCTGATGGGAAACCTGTCCAGCCTGTCAAAATTATTGATTGTGGTGAAGTTTCAGAGACAGAAATTCAGCATGCTATTGAGAAGGAAAAAGGGAAAAAGAGAAAATCAGGGAAATCCTTATATCCTGATGATAATTCTGGCAAAAGATCAAGAGGTAAAAGGAAAAAAACTTCAAAAGACACCAGGAGAAGGAAGAAGAGATACTCCACATCTGATAGTGATAGTAGTAGCAGTGACAGTTATTCCTCAGATTCTGAGTCAGATTCAGATTCCGAATCCGAATCTGACCCGTCCCATTCTGATTCAAGTTTGTCTAGTTATGGGAAGCATCGGAAGAGGAAGGGGAATAAGCGCAAGCATGAGAAGAGGAGGAGAAAGGGACAAAGGCAGAGAAGGAGCCAGCACAGTAGAAGTAAAAGATCAAGACACAAGTCCAAGTGGAGTTCAGAGGATTCAAGTGATACGGAAAGTGAGAGTTCTACTGCTAGTGACAGTAGTTCTGGCGAGGAGAAAGCCGATCGCCGTGGCCCAAGACGCAAAGCACTTGCTGACAATAAACCACAAAGGAATCTTGACACAGGAAAGCAATCTTCTAGCCCACCTCTAAAAAGTAAAAACATTTCGGAACAAGGGATGGACACTAAAGCTAGAAGAACTGTGGACAAGGAATCACATGAAGAAGGTGAATTGTCTCCAGAAAATGATGAACTTCTGAATAATGGGCATGATACTCGGGCCAAACTTATTAAACCTTCTAAGAAACAGCCCCATTCAGATGATTCAGATCAAAATAGAGGTGCGAGTCCTGGTCAAAAAGCATCTGAACTTGCAGCAACCAAAAACCAGGGTTTTTCGAAAAGTCCTTCACCACATGGTATGCCTAAGCGTATAAAAAAAGGACGTGGCTTTACCGAGCGCTATGCCTTTGCACGTAGATATCGTACTCCATCCCCCGAGCATTCTCCTTGTGCATATCGTTATGGTGATAGAAATATGAGAAGGAACTTTGATAGAAACTCAAGCTACAGAAGATATTCTGAGCGCTCCCCTCCAAGGCGTTTTCGGAACCCACCAAGGGGTGGGAACCATCCAAGAAACCAAAGTAGAAGAAGTCGGAGTAGAAGCATCTCTCGCAGTCCAGTGTGCGGCCGTTTTAGAGACCATGGTCGCAGCCGGAGTCCAGTACGCAGTCCTAGTCCTGAAGACAGGAGGCCTTCAATAAGTGACAGATTGAAATCCCGACTTGGTCCTCGAAACAATCAACCCTCTCCGGACAAAGGCAGGTCAAGGTCCAATTCTAGGAGTAACAGATCTTCTGGTTCCAGATCCCCTGATGCCACACCACCAAGACGATATGATAAAAAGACATCTCGAAGCAGTTCCAGATCAAGCTCTCTGTCTGGACAAAAGGGGTTAGTTTCTTATGGAGATGCAAGTCCTGATTCCGAGGCAAGGTAG 1938 0.4391 MVMGLEKDPHVFLDVSIGGDPVERIVIQLFAGVVPKTAENFRALCTGEKGIGASTAKPLHYKGTSFHRIIKGFMAQGGDFSRGNGTGGESIYGGKFADENFKLSHDGPGFLSMANSGANTNGSQFFITFKRQPHLDGKHVVFGKVVSGMDILKKIELVGSSDGKPVQPVKIIDCGEVSETEIQHAIEKEKGKKRKSGKSLYPDDNSGKRSRGKRKKTSKDTRRRKKRYSTSDSDSSSSDSYSSDSESDSDSESESDPSHSDSSLSSYGKHRKRKGNKRKHEKRRRKGQRQRRSQHSRSKRSRHKSKWSSEDSSDTESESSTASDSSSGEEKADRRGPRRKALADNKPQRNLDTGKQSSSPPLKSKNISEQGMDTKARRTVDKESHEEGELSPENDELLNNGHDTRAKLIKPSKKQPHSDDSDQNRGASPGQKASELAATKNQGFSKSPSPHGMPKRIKKGRGFTERYAFARRYRTPSPEHSPCAYRYGDRNMRRNFDRNSSYRRYSERSPPRRFRNPPRGGNHPRNQSRRSRSRSISRSPVCGRFRDHGRSRSPVRSPSPEDRRPSISDRLKSRLGPRNNQPSPDKGRSRSNSRSNRSSGSRSPDATPPRRYDKKTSRSSSRSSSLSGQKGLVSYGDASPDSEAR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00004 645 SUPERFAMILY Cyclophilin-like 8 177 IPR029000 -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 349 369 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 327 346 - -
Stsc17g00004 645 Gene3D - 3 184 IPR029000 -
Stsc17g00004 645 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 177 - -
Stsc17g00004 645 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 22 175 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 29 44 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 136 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 152 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 78 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 3 184 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 541 571 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 573 605 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 486 514 - -
Stsc17g00004 645 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 61 78 IPR020892 GO:0003755|GO:0006457
Stsc17g00004 645 MobiDBLite consensus disorder prediction 186 210 - -
Stsc17g00004 645 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 12 176 IPR002130 GO:0000413|GO:0003755
Stsc17g00004 645 CDD cyclophilin_ABH_like 9 175 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 269 303 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 422 448 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 370 421 - -
Stsc17g00004 645 MobiDBLite consensus disorder prediction 186 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00004 Stsc-Chr17 18648 24345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00004 27 173 U-box Gene Family AT5G67530 46.980 2.66e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00004 K09566 - gmx:100791082 704.131