Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00003 ATGGCGACACCAATGGCACGTGACAACCACGACCTCGAGAAACACATTCAGAAGCAGATGGGTTGCATGGCCGGCTTCCTTCACATCTTCGACCGCCATCACATCCTCGCCGGAAAACGCATCTACTCTGCCAAAACATTCCCTCCTGAAAGCGACACCTCACCGGAGCCGGAAAACAACAACGCTCTGTCTGACGTCGAATCCATACACGCACCCTCCACCCCAGAGCGCGCCACACAACCTCCCACGCCGGAAGCTACAACTCCAACTCCCGTTCCCCTTCCGGCATTCGAAGGCACGCGTTCTCCATGGAAGTTCTCCAGAGAGGCTCCCAGGCTTTCGTTGGATAGCAGAGCCGTCGTTGACGCAAAAGGAGCGCTTCACCCGAGACAGATCCCAACCAACAGCAACAACAACACGCAACAATTGCCTGTTGCTGACCTGGAGAAGCAGCGCCGATCCACCAGCGTTATTGCAAGGCTCATGGGATTGGACGAGCCTTCCCAAGACTCGGATCCTGAACCCGAGCTGCGAAGATCAGCTTCCGAGTCTAGGCTTCCCAGAGATCTTAACCTGAACCAATTCTCAGATCCAAAAGCTTTCGCCGTACGGAACGCCAAGGCAGAGCCAGCAGCCAGAGCTAATATCAATATCAGGAACAGGGGAGCCGTACAGAGGAAGAGCTTCTACGATGCCGCTGACATTTTCCCTGATACCAAACAACAAAGCGCCTCCATCTATGCCGAGATCGATCGGAGTTTGAAGATGCGACTCATCCATGAACCTTCAAAGGATCTAGACACGCTCAAGCAAATCCTTGAGGCTGTGCAACTCAAAGGCCTCCTCCATTCCCGAAACTACGATACTACCATTAACACCCACCGGAACATTCTCTTCGAAGGAGACGATTCTCCTATAGTCTTGATGAAGCCAGGGAGGCCTTACGGCCGTTCCACCTTGTACCGAACCGGTAGGTTCGGGAATGATTCTCCTCCGCCTTCCAGCTTCGGCTACAGTCCCCGGGCTCGTCGAAACAATGAAGTACTGTTTAGCCCGAGGCGCGAAACTGATAATGGGAGCGTGAGGGCTGTGTCTCAGGCCCGGGCCAGAAGCCTGTGCTCTCCAACACGCAGTGAGAGCGAAATGAGGAGCCCAAACCGGATGCGAAAGGTGAATGGTGGCTCTGATGCTGTTAACAGAAGAGTTGCTCCGGTTAGAGTTAGGTCGAGGATTGTGGCAGGTGAGCAGAACGCGACGAACCGATCGCCGAGAATGAGAAGAGGAACTCTCCAACAGGAAGAGAAAGCGGCAGAGGATGCATATTCCACCGTCTCAGAGAGCAGTTTCAGCACTTGCTCACACACTGATACAGAGAGGTTGAAAATGGAGGAGAAGAGGGAAGGGAGGAGTCTACTGGAGAGGTGCGATAAGCTGCTGAACAGCATAGCGGAGATAACGGGATCGGGACAGGGAGAGTCAGAACAACCAAGTCCGGTATCTGTTCTGGACTCGTCATTTTACAAGGAGGAGGAGGAGTCGTGTTTGCCATCCCCGGTGATGAAACGGTGTATTGATTACAAAGAGCAAGCAGGGGATTCAGAAGATGAGATGTGGAATGCAGCCATGTGGTGCAACCACTCAAGCGACGACACCGATTTCGTATACATTTCGGAGATACTCCGTGCTTCCAACCACTTCCCGGAGGACAGTGACGTCTTCCTTCTGCTCGAGAAGCAGCAGTACCTAAAGGGAAACGACACCTCCAAGTCCTCCACGCTCCGGAGACGCTTGATCTTCGACACCGTTCGGGAAATCCTCCACCGCAACCGCCGCCTTCCTCCCTGGAAAGAGGCCTCCTGGGCGGACAACACGCCACTCTTGCACCGGATTTGGACCGAGTTTCGTAGGATCCGAGGGAGGGAAGAGGAGGAGGAGGAGGTGCCTGAGGAGCTGTTTGAGGTGATATGCGGTGTGCTTAGAAAAGATGTGGCGGAGGAAGGGGTGGAGGAGTGGGGAGAGCGCCACGTGGAGATGGGAGATGTGGTGTTAGACATGGAGCGCCTCGTGTTCAAGGACCTCATTGTTGAAACCATTAGAGAGCTTGCGTGGTTTAGGAAACCTCCATTCAACAGCAACAGATCAGTCTCTGCCTATCGCAGGAAGTTGTTGTTTTGA 2175 0.5389 MATPMARDNHDLEKHIQKQMGCMAGFLHIFDRHHILAGKRIYSAKTFPPESDTSPEPENNNALSDVESIHAPSTPERATQPPTPEATTPTPVPLPAFEGTRSPWKFSREAPRLSLDSRAVVDAKGALHPRQIPTNSNNNTQQLPVADLEKQRRSTSVIARLMGLDEPSQDSDPEPELRRSASESRLPRDLNLNQFSDPKAFAVRNAKAEPAARANINIRNRGAVQRKSFYDAADIFPDTKQQSASIYAEIDRSLKMRLIHEPSKDLDTLKQILEAVQLKGLLHSRNYDTTINTHRNILFEGDDSPIVLMKPGRPYGRSTLYRTGRFGNDSPPPSSFGYSPRARRNNEVLFSPRRETDNGSVRAVSQARARSLCSPTRSESEMRSPNRMRKVNGGSDAVNRRVAPVRVRSRIVAGEQNATNRSPRMRRGTLQQEEKAAEDAYSTVSESSFSTCSHTDTERLKMEEKREGRSLLERCDKLLNSIAEITGSGQGESEQPSPVSVLDSSFYKEEEESCLPSPVMKRCIDYKEQAGDSEDEMWNAAMWCNHSSDDTDFVYISEILRASNHFPEDSDVFLLLEKQQYLKGNDTSKSSTLRRRLIFDTVREILHRNRRLPPWKEASWADNTPLLHRIWTEFRRIRGREEEEEEVPEELFEVICGVLRKDVAEEGVEEWGERHVEMGDVVLDMERLVFKDLIVETIRELAWFRKPPFNSNRSVSAYRRKLLF 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00003 724 MobiDBLite consensus disorder prediction 130 149 - -
Stsc17g00003 724 PANTHER LONGIFOLIA PROTEIN 5 59 IPR033334 GO:0051513
Stsc17g00003 724 MobiDBLite consensus disorder prediction 358 381 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 77 91 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 416 465 - -
Stsc17g00003 724 Pfam Domain of unknown function (DUF4378) 552 696 IPR025486 -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 47 76 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 323 341 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 436 455 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 127 191 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 322 341 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 46 110 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 171 185 - -
Stsc17g00003 724 MobiDBLite consensus disorder prediction 355 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00003 Stsc-Chr17 8855 12047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00003 466 724 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 50.193 1.06e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00003 - - adu:107493166 1124.77