Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc179g00008 ATGAAGAGAAAACATGATTATTTCAAAATAGCTCAAAATTTGAAATTAGACACAAATATATACATACTAATGCAACGTCTTCCTTCAAAGGTCGTAGCAATCAAGAAGATGGCGCTGCCGGCAATCAAAGAAGCAGAGGGGGAACGTGAGTTCCGTGTTGAAGTGGACATCTTGAGCAGACTCGACCACCCAAATCTTGTTTCTCTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCATAATGGAAACCTGCAAGATCATTTGAATGGCATTGGAGAAAGAAAAATGGATTGGCCCCTAAGACTCAAAGTGGCACTAGGAGCTGCAAAAGGCCTTGCTTATCTCCACTCAAGTTCTGATGTTGGAATTCCCATTGTCCATAGAGATTTCAAATCTACCAATATTCTCTTAGATGCTAACTTTGATGCAAAGATATCTGACTTTGGGCTTGCCAAGTTAATGCCAGAAGGACAAGAGACACATGTGACGGCAAGAGTTCTCGGCACCTTTGGCTACTTTGATCCTGAGTATACATCGACTGGGAAACTTACTCTGCAAAGTGATGTTTATGCTTTCGGTGTTGTTCTTCTGGAGCTTTTGACTGGACGCAGAGCAGTTGATCTAAACCAAGGTCCAAATGATCAGAACCTTGTACTACAGGTGAGACATATTCTTAATGATCGAAAGAAGCTGCGTAAGGTCATCGATCCAGAGATTGCCCGAAATTCTTACACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTCCGAAGTGATAGTAATGAGAGACCTTCAATGGCGGAATGTGTACAGGAACTCCTAATGATTATCTATACAAATTCAAAAGGTTTGGGAATGGTTATGCATAGTTTGAGATTGATCTAG 918 0.4085 MKRKHDYFKIAQNLKLDTNIYILMQRLPSKVVAIKKMALPAIKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGIGERKMDWPLRLKVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDANFDAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHILNDRKKLRKVIDPEIARNSYTIQSIVMFANLASRCVRSDSNERPSMAECVQELLMIIYTNSKGLGMVMHSLRLI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc179g00008 305 ProSiteProfiles Protein kinase domain profile. 1 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc179g00008 305 Pfam Protein kinase domain 21 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc179g00008 305 Gene3D Transferase(Phosphotransferase) domain 1 87 295 - -
Stsc179g00008 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Stsc179g00008 305 PANTHER OS01G0750732 PROTEIN 29 287 - -
Stsc179g00008 305 PIRSF ILK 8 295 - -
Stsc179g00008 305 CDD STKc_IRAK 30 284 - -
Stsc179g00008 305 FunFam receptor-like serine/threonine-protein kinase NCRK 86 296 - -
Stsc179g00008 305 SUPERFAMILY Protein kinase-like (PK-like) 21 291 IPR011009 -
Stsc179g00008 305 Gene3D Phosphorylase Kinase; domain 1 22 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc179g00008 Stsc-Chr179 72472 75945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc179g00008 35 288 Receptor kinase-like Gene Family AT3G58690 47.126 2.57e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Stsc179g00008 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc179g00008 - - aprc:113868910 516.924