Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc178g00009 ATGAACATGAACAACTCTTCTTCGAATTATTCGGATGACTCTCAAGATGACATGACCGGATACGGCTACTACTCGGTTTCCTTGTCCCTTGGCTTTCTCCTCCTCATGGCATTCTTTGCTCTCACTGCATACTACTGCAGCAAAAGCAGGCTTCGAAACGGGCGAACCGGACCGAGCTCAACCAGTAGCGGTTTCAATTCAAACAGGACAGTGATCATGGACAGAGACTCATCATCCATAGCAATCCAAATTGGTGAGGAACAGCAACAAATGCAAGAATCAGTCCTCAGAACTTATCCTATGTTGTTGTTCTCCCAAGCCAAGCTTCATCATCAAAAGGCTGATGATCCAGCAGAACTACTCAATTGCTCAATATGTTTGGCAGATTATGCAGACTCAGAGTGGTTAAGGCTATTGCCTGATTGTGGCCATTTCTTTCATAGGGATTGTATTGATGTATGGTTGAGGCTAAACCTTTCTTGTCCAATGTGTAGGAACTCTCCATTACCAACCCCTCTTGCTGAAGTTACTCCCTTGGCTGCAGCAAGGAGTAATTGA 558 0.448 MNMNNSSSNYSDDSQDDMTGYGYYSVSLSLGFLLLMAFFALTAYYCSKSRLRNGRTGPSSTSSGFNSNRTVIMDRDSSSIAIQIGEEQQQMQESVLRTYPMLLFSQAKLHHQKADDPAELLNCSICLADYADSEWLRLLPDCGHFFHRDCIDVWLRLNLSCPMCRNSPLPTPLAEVTPLAAARSN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc178g00009 185 Pfam Ring finger domain 122 165 IPR001841 -
Stsc178g00009 185 SUPERFAMILY RING/U-box 122 168 - -
Stsc178g00009 185 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 174 IPR045899 -
Stsc178g00009 185 SMART ring_2 123 164 IPR001841 -
Stsc178g00009 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 169 IPR013083 -
Stsc178g00009 185 CDD RING-H2_EL5-like 123 165 - -
Stsc178g00009 185 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc178g00009 Stsc-Chr178 35337 35894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc178g00009 16 180 C3H Transcription Factor Family AT5G06490 32.973 4.37e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc178g00009 - - adu:107466513 272.707