Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc178g00008 ATGTCCAATTCATCAACTTCCCAATCCAATGATGGTTTTGATACAAGTGGTTTCACATATGGCGTAGCATTTGTACTAGGTTTGATCTTCTTACTTGCTGCCATAACTTTTGCGTGTTTTCATATTCGCAATATTCGAAATCTCAACCTATTTATCAACATTGCGGCTGGTGTTCCGCCGTCGTCGCAGTCTCACCAAACGTTAGCTGAAGCCCTAGAACAGGGACATCGCCACGTGGACGTTCGTATCGACACGAGTTACCAAAATTACCCTAAAATGCCTTATTCCGAAGAGGTAATGAAGAAAAGTAGTGTTGGGGGTGGATGCACAATATGCTTAGGAGATTATAAAGAGAGTGAGATGTTGAGGGTTCTTCCTGGTTGTGGCCATGTCTTTCACCAAGTTTGTGTTGATCCATGGCTCATGTTACACTCAACTTGCCCCATATGTAGAAAATCATTGCCTCAAGAAGCTCCATAG 480 0.4292 MSNSSTSQSNDGFDTSGFTYGVAFVLGLIFLLAAITFACFHIRNIRNLNLFINIAAGVPPSSQSHQTLAEALEQGHRHVDVRIDTSYQNYPKMPYSEEVMKKSSVGGGCTICLGDYKESEMLRVLPGCGHVFHQVCVDPWLMLHSTCPICRKSLPQEAP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc178g00008 159 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Stsc178g00008 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 154 IPR045899 -
Stsc178g00008 159 SMART ring_2 109 150 IPR001841 -
Stsc178g00008 159 Pfam Ring finger domain 109 151 IPR001841 -
Stsc178g00008 159 SUPERFAMILY RING/U-box 91 156 - -
Stsc178g00008 159 CDD RING-H2_PA-TM-RING 109 151 - -
Stsc178g00008 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc178g00008 Stsc-Chr178 31063 33476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc178g00008 17 158 C3H Transcription Factor Family AT5G06490 33.951 5.29e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc178g00008 - - aip:107616940 206.068