Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc178g00003 ATGGACACAAGTGCTGCAAATGTAAATGCCTTGAATTTCAGTTCCTCTTCTTTCTGTTGTGGAACCGATGAACACGATTTTCGATGGATCGGAGGCTTTCGCCCTTCTAAAATTTTGCAGGTTATGTTGCCACAACTTGAAGATTCATGTAATTGCCAGCAACAAGTGTGTGATATTATCAAGTTTGGAAAATCATGTGAGCAAGCAGAATATGCTCTTTCACAAGGCATGGAGAAGCTACATCAATTGCATGCTAAAGCAACAGCAGCAGGTGACAAGGGATCTCAAGTCATTTTTGTTTCTCAACTGATTAGTTTTTTAAAGCAGGCTAATCATCTTCGTCAAGAATTCCTGCATCGATTCTCTCGATTTCTTACAGATTCTCAAGAAGCTCAAATCTTACTTGCCTTGGGGATTAAGCTTTCTCAAGATATATGA 438 0.3927 MDTSAANVNALNFSSSSFCCGTDEHDFRWIGGFRPSKILQVMLPQLEDSCNCQQQVCDIIKFGKSCEQAEYALSQGMEKLHQLHAKATAAGDKGSQVIFVSQLISFLKQANHLRQEFLHRFSRFLTDSQEAQILLALGIKLSQDI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc178g00003 145 PANTHER TRANSCRIPTION FACTOR TGA9 24 138 - -
Stsc178g00003 145 ProSiteProfiles DOG1 domain profile. 1 145 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc178g00003 Stsc-Chr178 15925 17361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc178g00003 1 138 Calmodulin-binding Proteins AT5G10030 41.216 9.30e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc178g00003 K14431 - aip:107617158 263.848