Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1779g00001 ATGATAGTGTTTGTGCTTCCAAGGAATTTGGGGATATCGTCAGGAGCGAATTATGCTAAGAATCTTCTTCGTGCTGCAGTTCTTGTTCAGTATATTCCCAGGCTATTCAGGTTTCTTCCATTGCTATTTGGCCAATCTACATCAGGATTCATATTTGAGTCAGCTTGGGCAAATTTCATCATAAATCTTCTCATTTTTATGCTATCTAGCCATGTTGTTGGCTCTTGTTGGTACCTCTTTGCTGTGCAGAGGGTTAATCAATGTTTGCGAGATGCCTGCCATAATTCTGGTATTTATGAGTGCATAAAAGTCATTGATTGTGGACATGGCCGTAGTTTAGACGATCAATCTGCTCTTTGGAGCAACGATACTGAGGCCATTGCTTGCTTAAATCCCTCATCTACGGCTACTAATTCATTTCGTTTTGGAATCTATGCCAATGCTGTACCACTTACTACGGAAACTGATGTTGTTAACAAATATGTGTATGCTTTGTTTTGGGGTTTCCAGCAAATAAGTTCTCTCGGCAGTAGTCTGATCCCAAGTTATTTTGTGTGGGAAGTACTGTTCACAATGGCAATCATAGGATTGGGACTCTTGCTTTTCTCGCTTCTCATTGGAAACATGCAGAACTTTCTTCAGTCTCTAGGTAGAAGAAAGCTTGAAATGCAACTTAGAGGCCGTGACGTCGAGCGATGGATGAGCCACCGTCACTTGCCGGAAGATCTAAAGAAGCGAGTGCGGCAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGAGTGAATGAAGAAATGGTTATGGAGAATTTACCAGAAGATCTTCAGAGAGACATAAGGCGCCATCTCTTCAAATTTATCAAGAAAGTGCGGATTTTTGCCCTGATGGATGAGCCAATCTTGGATGCAATTTGTGAGAGAATAAGACACAAGACATACATCAAAGGAAGTAGAATCTTGAACCATGGAGGCATTATAGAGAAAATGGTCTTCGTTGTTCGCGGGAAATTGGAGAGCATCGGAGTTGATGGAATCGTAGTTCCCTTAGGTGAAGGGGATGCTTGTGGCGAAGAACTTTTGACATGGTATCTTGAATATTCTTTGGTGAGAACAGATGGTAAGAAAGTAAGGGTTCCTGGACAGAGATTGCTTAGCAACAGGACAGTGAAGTGCTTAACAAATGTGGAGGTATTTTCGCTCCGAGCGGCAGATCTCGAAGAAGTCACAACCTATTTCACAAGATTCCTGAGGAGTCCACATGTTCAGGGAGCTCTAAGGTACGAATCACCTTATTGGAGATCACTTGCAGCAACACGAATTCAAGTTGCCTGGAGATACAGAAGAAAACGTTTGAGTCGTTGTGATAGCCAAAATTTCTAA 1377 0.4241 MIVFVLPRNLGISSGANYAKNLLRAAVLVQYIPRLFRFLPLLFGQSTSGFIFESAWANFIINLLIFMLSSHVVGSCWYLFAVQRVNQCLRDACHNSGIYECIKVIDCGHGRSLDDQSALWSNDTEAIACLNPSSTATNSFRFGIYANAVPLTTETDVVNKYVYALFWGFQQISSLGSSLIPSYFVWEVLFTMAIIGLGLLLFSLLIGNMQNFLQSLGRRKLEMQLRGRDVERWMSHRHLPEDLKKRVRQAERYNWAATRGVNEEMVMENLPEDLQRDIRRHLFKFIKKVRIFALMDEPILDAICERIRHKTYIKGSRILNHGGIIEKMVFVVRGKLESIGVDGIVVPLGEGDACGEELLTWYLEYSLVRTDGKKVRVPGQRLLSNRTVKCLTNVEVFSLRAADLEEVTTYFTRFLRSPHVQGALRYESPYWRSLAATRIQVAWRYRRKRLSRCDSQNF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1779g00001 458 Gene3D Jelly Rolls 289 413 IPR014710 -
Stsc1779g00001 458 CDD CAP_ED 291 407 IPR000595 -
Stsc1779g00001 458 Coils Coil 458 458 - -
Stsc1779g00001 458 Gene3D Helix hairpin bin 218 283 - -
Stsc1779g00001 458 Gene3D - 1 216 - -
Stsc1779g00001 458 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 452 - -
Stsc1779g00001 458 SMART cnmp_10 291 423 IPR000595 -
Stsc1779g00001 458 SUPERFAMILY Voltage-gated potassium channels 26 214 - -
Stsc1779g00001 458 ProSiteProfiles cAMP/cGMP binding motif profile. 291 359 IPR000595 -
Stsc1779g00001 458 SUPERFAMILY cAMP-binding domain-like 219 413 IPR018490 -
Stsc1779g00001 458 Pfam Ion transport protein 26 219 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1779g00001 Stsc-Chr1779 7878 10901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1779g00001 1 368 Ion Channels AT3G17700 65.489 8.68e-165 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1779g00001 K05391 - gmx:100795427 713.761