Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc175g00014 ATGGTATGTGGGAACAATAACAATGAAGAAAAAGAAAAAGAGGTACGAGCACTGATGGAGATGAAGGCAAGCATGGATCCATTTGGTCACTACCTAACCTCATGGACCATCAATGGCAACCCATGTGAAGGTTCTTCCTTTGAAGGTGTGGCCTGCAATGACAAGGGTCAGGTTGCAAATATTTCTTTGCAGGGAAAGGGCCTCATAGGGAAGCTTTCACCAGCCATTGGTAGACTCAAGCATTTGACAGGACTCTACTTGCATTACAACTCTTTGTATGGTCAGATACCAAGGGAAATTGCAAACTTGACTCAGCTTGGTGATTTGTATCTCAATGTTAATCATCTTTCTGGGAAAATCCCAACTGAGATTGCCAACATGGACAACTTGCAAGTTTTGCAGCTTTGCTATAATCAGTTGACAGGAAGCATACCTACCCAGCTTGGTTCTTTGAAGAAGCTGAGTGTTGTTGCTCTTCAGTCAAACCAGTTGACTGGTGCTATCCCTGCTAGCCTAGGTGACTTGCCTATCATGGTGAGGCTTGATTTGAGCTCTAACAAACTCTTTGGTTCCATTCCCACTAGCCTTGCTGATGCTCCTTCCCTCAAAATCCTTGATCTTCACAACAATACTCTTTCTGGGAATGTTCCTCCTGCTCTTAAGAGACTTGAAGATGGATTTCTATATGAGGAAAATCTGGGGCTATGTGGACTTGGCTTTAAATCCCTTAAGGCCTGCAGTGCTTCGGATCGCAAACCTGAACCTTATGGAGCAGCAACAAGAGATATCCCAGAGACTGCAAATGTGAAGTTACCTTGCAATGGAAGCCAGTGCCTAAACTCTCCAAAATCCAAACAAGCAACATCCATTACCATTGGTATAGTTGTGGTTGCAATTGCAGTGTCAGCAATTGGTATCTTGGCCTTCACGTTACATCGCAGGCGAAAACAGAAGCTAGGAAGCTCTTTTCATGTCTCTGATGGCAGGCCAAGTATTGATGAATCCAGGAGTATATACAGGAAAAGCGGATCTCCTTTGGCGAGCCTCGAGTACTCTACAGGATGGGACCCCTTATCTGATTGTAGGAGCTTCAATGGTGTTGATGATAGTGATGAAGAAACCTTCCAGAGTTTCAGGTTCAACTTGGAAGAAATTGAGTCTGCTACTCAGTATTTCTCAGAGATGAATCTGTTGGGTAAGAGTAGCTTCAGTGCAACATACAAAGGAGTTCTAAGAGACGGTTCAGTAGTTGCTGTGAAGAGTATCAGCAAAACTAGCTGCAAGTCAGATGAAGGTGAATTCTTGAAGGGTTTGAGCATTTTGACATCTCTGAGGAATGATAATTTGGTGAGGCTAAGAGGGTTTTGTTGTTCAAGGGGAAGAGGCGAATGCTTCTTGGTTTATGACTTCGTTTCGAATGGAAATCTTTCGCGGTTTCTTGATTTGAAGGAAGGGGATGGAGAAGTTCTAGAGTGGTCAACTAGAGTATCCATTGTGAAAGGGATTGCTAAAGGTGTAGCATATTTACATGCACACAAGGCTAAGAAGGCAGTTCTTGTTCACCAAAACATCTCAGCAGAGAAAGTGCTGGTGGATCACCGGTACAACCCGATGCTGGCAGATTCCGGCCTGCACAAGCTTCTTACCAATGACATTGTCTTCTCTGAACTTAAGGCCAGTGCAGCAAAGGGTTACCTTGCTCCTGAGTACACCACAACCGGCCGGTTCACTGAGACGAGTGATGTTTATGCTTTTGGAGTGCTCCTATTGCAGATCCTCTCAGGGAAGAAGCACATCAGTAACTCAATTAGGCTCGCCGCGGCGGAATCATCAAGGTTCCAAGAATTCATTGATCCGAATCTCCATGGGAGATTCTTCGAATATGAAGCGGCTAAACTGGTGAAAATTGCTTTGCTTTGCTGCAGTGAGTCTCCATTTGAGAGGCCATCTATGGAAGGCATTGTTCAAGAACTGGGAAATTGTAGTAGCTGTATCTGA 1998 0.4439 MVCGNNNNEEKEKEVRALMEMKASMDPFGHYLTSWTINGNPCEGSSFEGVACNDKGQVANISLQGKGLIGKLSPAIGRLKHLTGLYLHYNSLYGQIPREIANLTQLGDLYLNVNHLSGKIPTEIANMDNLQVLQLCYNQLTGSIPTQLGSLKKLSVVALQSNQLTGAIPASLGDLPIMVRLDLSSNKLFGSIPTSLADAPSLKILDLHNNTLSGNVPPALKRLEDGFLYEENLGLCGLGFKSLKACSASDRKPEPYGAATRDIPETANVKLPCNGSQCLNSPKSKQATSITIGIVVVAIAVSAIGILAFTLHRRRKQKLGSSFHVSDGRPSIDESRSIYRKSGSPLASLEYSTGWDPLSDCRSFNGVDDSDEETFQSFRFNLEEIESATQYFSEMNLLGKSSFSATYKGVLRDGSVVAVKSISKTSCKSDEGEFLKGLSILTSLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSRFLDLKEGDGEVLEWSTRVSIVKGIAKGVAYLHAHKAKKAVLVHQNISAEKVLVDHRYNPMLADSGLHKLLTNDIVFSELKASAAKGYLAPEYTTTGRFTETSDVYAFGVLLLQILSGKKHISNSIRLAAAESSRFQEFIDPNLHGRFFEYEAAKLVKIALLCCSESPFERPSMEGIVQELGNCSSCI 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc175g00014 665 Gene3D Ribonuclease Inhibitor 127 246 IPR032675 -
Stsc175g00014 665 Gene3D Transferase(Phosphotransferase) domain 1 471 664 - -
Stsc175g00014 665 ProSiteProfiles Protein kinase domain profile. 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc175g00014 665 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Stsc175g00014 665 Pfam Protein tyrosine and serine/threonine kinase 396 658 IPR001245 GO:0004672|GO:0006468
Stsc175g00014 665 FunFam Leucine-rich repeat receptor-like kinase 13 123 - -
Stsc175g00014 665 FunFam Protein NSP-INTERACTING KINASE 2 363 470 - -
Stsc175g00014 665 SUPERFAMILY L domain-like 15 222 - -
Stsc175g00014 665 Gene3D Phosphorylase Kinase; domain 1 363 470 - -
Stsc175g00014 665 SUPERFAMILY Protein kinase-like (PK-like) 370 658 IPR011009 -
Stsc175g00014 665 FunFam Protein NSP-INTERACTING KINASE 2 471 662 - -
Stsc175g00014 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 144 659 IPR046959 -
Stsc175g00014 665 CDD STKc_IRAK 398 658 - -
Stsc175g00014 665 Pfam Leucine rich repeat N-terminal domain 13 53 IPR013210 -
Stsc175g00014 665 FunFam Protein NSP-INTERACTING KINASE 2 125 247 - -
Stsc175g00014 665 Gene3D Ribonuclease Inhibitor 13 126 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc175g00014 Stsc-Chr175 50334 52976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc175g00014 14 505 Miscellaneous Gene Families AT4G22730 54.420 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc175g00014 PK_Tyr_Ser-Thr 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc175g00014 - - gmx:100775422 1048.88