Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc175g00008 ATGGATTTCTGGCCAGAAATTCATGCAACAAGCTGGGGAAGGGAGTTTGTAGCAGGAGGGCTTGGAGGGATTACTGGATTAGTATCTGGTCATCCATTAGACACGGTGAGAATAAGGCAACAGATCTTAAGCACCGGTGGCGGCGGCGGTGGCTCATCGTCGGCATTCACCATCCTTAGAAATGCTCTGGCTAGGGAAGGACCTGCTTCTCTCTACCGTGGCATGGGTGCACCTTTGGCCACTGTTGCATTTCAAAATGCTATGGTTTTCCAAACTAATGCAATTCTTTCAAGGGCATTTGACAAACCTGTTTCTCCTAAAGACCCTCCTTCCTTAAAGGCTGTAGCATTAGGAGGAATTGGCACAGGTGTCCTACAGAGCCTAATGATTTCCCCGGTCGAGATGATCAAGATTCGCCTTCAGCTCGGCCGCAGCGAGAAACACTTGACAGAACAACAACCATACAAAGGTCCTATAATGGTTGCCAAGAATGTATGGAGAAGAGAGGGAATTAGAGGAATCTACAGAGGACTAGGCATCACTGTGTTAAGGGATGGACCTTCACATGGTGTGTATTTCTGGACTTATGAATACATGAGGGAAGTTCTTCACCCAGGTTGTAGAAAAAGTGGTGAAGAAAGGCTGAGTACTATGTTGGTGGCAGGTGGATTAGCTGGTGTAGCAAGCTGGATTGTGTGCTACCCTTTTGATGTTGCAAAGACAAAGTTACAAGCTCAGACATGTGATTGTTTGAAATACAATGGCACTGTTGATTGCCTCAGAAAGAGCATTAAGGAAGAAGGGTATGATGTTCTATGGCGTGGGTTAGGAACAACTGTTGCTAGAGCTTTTGTAGTGCATGCTGTTGTTTTTTCAGCTTATGAGATCACATTGAGCAAGCACAATATTGACATAACTTCTGATGAAGACATTATATAG 939 0.4505 MDFWPEIHATSWGREFVAGGLGGITGLVSGHPLDTVRIRQQILSTGGGGGGSSSAFTILRNALAREGPASLYRGMGAPLATVAFQNAMVFQTNAILSRAFDKPVSPKDPPSLKAVALGGIGTGVLQSLMISPVEMIKIRLQLGRSEKHLTEQQPYKGPIMVAKNVWRREGIRGIYRGLGITVLRDGPSHGVYFWTYEYMREVLHPGCRKSGEERLSTMLVAGGLAGVASWIVCYPFDVAKTKLQAQTCDCLKYNGTVDCLRKSIKEEGYDVLWRGLGTTVARAFVVHAVVFSAYEITLSKHNIDITSDEDII 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc175g00008 312 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Stsc175g00008 312 PRINTS Mitochondrial carrier protein signature 125 143 IPR002067 GO:0055085
Stsc175g00008 312 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085
Stsc175g00008 312 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Stsc175g00008 312 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Stsc175g00008 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 99 IPR018108 -
Stsc175g00008 312 Pfam Mitochondrial carrier protein 10 101 IPR018108 -
Stsc175g00008 312 Pfam Mitochondrial carrier protein 216 297 IPR018108 -
Stsc175g00008 312 Pfam Mitochondrial carrier protein 113 203 IPR018108 -
Stsc175g00008 312 SUPERFAMILY Mitochondrial carrier 11 295 IPR023395 -
Stsc175g00008 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 202 IPR018108 -
Stsc175g00008 312 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 299 - -
Stsc175g00008 312 Gene3D Mitochondrial carrier domain 4 116 IPR023395 -
Stsc175g00008 312 Gene3D Mitochondrial carrier domain 117 304 IPR023395 -
Stsc175g00008 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 300 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc175g00008 Stsc-Chr175 24127 25326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc175g00008 1 298 Antiporters AT1G79900 64.094 1.18e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc175g00008 K15109 - gmx:100812056 415.616