Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc175g00001 ATGTCTTCAATAATAACCAGTAATGGCTATAATGCTGCAGAGCTCTTTGAAGGGCAAGCTCAGTTATACAAACTCCTTTTTAGCTTCCTCACTCCAATGTGTCTCAAGTGGGCTACTGAGTTAAACATACCAACAATAATCCACAAACATGGCAATCCCATGACTCTTCCTCACTTACTCTCAGCCTTGAATCTTCCACCCTCTAAAAACTGGATGGTGCCGCGCCTCATGCGCTTTCTAGTGCACCATGGACTCTTTGCCATTGTAAGAATTCATGATGATAGTGATGAAGGAGAACAAGAAGTAGCATATGGTTTGACCCCTGCATCAGAGCTACTTGTTGAAGGCACTGAATATTGCTTATCCTCCACGGCTATGTTCACAGTGTTTGATGGTCCTGAAGTAGTTATTAAATTGGGGGATTGGATACACTCTGGGAAAGAGAACATATCGCCATTAGAGACTTCCTTAGGAGTTAACTTTTGGGATTTGATTCATGGAAATCCTGAGAGGTTCAGTGGCTTCAATGAGGCCATGGCAAGTGATTCTCAAATGATGAACTTGGCATTGAGAGATTGCAAATCTGTGTTTGAAGGAATAGAATCCATTGTTGATGTTGGTGGTGGAAATGGAGCCACTGGAAAAATCATCTCTCAGGCATTTCCTGAGTTGAAATATATTGTGTTTGATCTTCCATCAGTTGTAGCAGATTTGGAAGGAAATGGTAATTTGAGTTATGTTGGTGGTGACATGTTTCAATCTATTCCTCAAGCTGATGCTATTTTACTCAAGTGGATTTTACATGATTGGAATGACGATGAATGCAAAAAGATTCTTAAAAATTGCAAAGATTCCATCTCAAGAAAAGGAAAAGGAGGAAAAGTGATAATCATTGATGTAGTTAATATAAATGAAGAGGAAGACACAAATGATATGGCACAAATAAAAGTTCTTCTGGATATGAGCATGGTGGCATGTTGTGGTGGAAAAGAACGAGATGCAAAAGAATGGAAACAACTTTTCACAGATTCTGGTTTTGAGGACTACAAAATATTTCCTCAATTTGGTTTTAGGTCTATTATTCAGCTCTATCAGTAG 1098 0.3898 MSSIITSNGYNAAELFEGQAQLYKLLFSFLTPMCLKWATELNIPTIIHKHGNPMTLPHLLSALNLPPSKNWMVPRLMRFLVHHGLFAIVRIHDDSDEGEQEVAYGLTPASELLVEGTEYCLSSTAMFTVFDGPEVVIKLGDWIHSGKENISPLETSLGVNFWDLIHGNPERFSGFNEAMASDSQMMNLALRDCKSVFEGIESIVDVGGGNGATGKIISQAFPELKYIVFDLPSVVADLEGNGNLSYVGGDMFQSIPQADAILLKWILHDWNDDECKKILKNCKDSISRKGKGGKVIIIDVVNINEEEDTNDMAQIKVLLDMSMVACCGGKERDAKEWKQLFTDSGFEDYKIFPQFGFRSIIQLYQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc175g00001 365 PIRSF O-mtase 3 365 IPR016461 GO:0008168
Stsc175g00001 365 Gene3D Vaccinia Virus protein VP39 123 364 IPR029063 -
Stsc175g00001 365 PANTHER O-METHYLTRANSFERASE 17 350 IPR016461 GO:0008168
Stsc175g00001 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 365 IPR016461 GO:0008168
Stsc175g00001 365 FunFam O-methyltransferase ZRP4 120 365 - -
Stsc175g00001 365 SUPERFAMILY "Winged helix" DNA-binding domain 13 116 IPR036390 -
Stsc175g00001 365 Gene3D - 8 113 IPR036388 -
Stsc175g00001 365 FunFam Coniferyl alcohol 9-O-methyltransferase 6 113 - -
Stsc175g00001 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 361 IPR029063 -
Stsc175g00001 365 Pfam Dimerisation domain 33 81 IPR012967 GO:0046983
Stsc175g00001 365 Pfam O-methyltransferase domain 138 347 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc175g00001 Stsc-Chr175 1850 5237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc175g00001 14 351 Monolignol Biosynthesis Gene Families AT5G54160 33.811 1.89e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc175g00001 K22588 - gmx:100818724 368.622