Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1752g00002 ATGGAACGCGGTGTTCTTGATGGTATCATAAGTAGGTTGCTTGATGTTAGAGGAAGACCTGGGAAACAGGTGCAGCTTTCTGAGGCAGAAATCAAGCAGCTTTGTTTGGTTTCCAAAAATATCTTCTTGAGGCAGCCCAATCTCTTGGAACTAGAGGCTCCAATTAAGATATGTGGAGATGTTCATGGTCAATATTTCGACCTTCTAAGACTATTCGAGCATGGCGGATTTCCTCCTCGGTCCAACTACTTATTTTTAGGGGATTATGTGGATCGCGGGAAGCAAAGTCTGGAGACAATATGTCTACTCTTAGCCTACAAGATAAAATATCCAGAAAACTTTTTCCTTCTGAGGGGCAACCATGAATGTTCTTCTATAAACCGTATCTATGGATTTTACGATGAATGTAAAAGGAGATTCAATGTCCGGATGTGGAAAACATTTACCGATTGTTTCAACTGCTTGCCCTTGGCTGCTCTAATTGATGACAAGATAATCTGTATGCACGGCGGACTCTCTCCGGACTTGCGAAATCTAAACCAGATAAGGAGTTTGGGTCGTCCAACCCAAGTACCAGAAACCGGTTTGCTATGTGACCTTCTTTGGTCTGATCCTTGTAGAGACATTGAAGGTTGGGGAGCCAATGAACGCGGAGTTTCATATACTTTTGGAGCTGATAGAGTGACAGAGTTTCTTGAAAAGCATGATCTGGACTTGATTTGTAGAGCTCATCAGGTTGTTGAAGATGGATATGAATTCTTTGCTAATAGACAACTTGTGACTATCTTTTCAGCACCAAATTATTGTGGAGAGTTTGATAATGCTGGAGCAATGATGAGCGTTGATGAGACACTTATGTGCTCTTTCCAAATACTAAAGCCGCTTGAGAAAAGGTCTAAGTTCAGTTTTGGAATCACTAACACAGTTAAGTCTAGCACTCCCTCCAAAATCAAGGCATTCCTTGGTGGTAAAGTATGA 978 0.4162 MERGVLDGIISRLLDVRGRPGKQVQLSEAEIKQLCLVSKNIFLRQPNLLELEAPIKICGDVHGQYFDLLRLFEHGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECSSINRIYGFYDECKRRFNVRMWKTFTDCFNCLPLAALIDDKIICMHGGLSPDLRNLNQIRSLGRPTQVPETGLLCDLLWSDPCRDIEGWGANERGVSYTFGADRVTEFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPLEKRSKFSFGITNTVKSSTPSKIKAFLGGKV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Stsc1752g00002 325 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Stsc1752g00002 325 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Stsc1752g00002 325 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 299 - -
Stsc1752g00002 325 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Stsc1752g00002 325 Gene3D - 2 305 IPR029052 -
Stsc1752g00002 325 CDD MPP_PP1_PPKL 5 294 - -
Stsc1752g00002 325 FunFam Serine/threonine-protein phosphatase 1 303 - -
Stsc1752g00002 325 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Stsc1752g00002 325 SMART pp2a_7 26 296 IPR006186 GO:0016787
Stsc1752g00002 325 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1752g00002 Stsc-Chr1752 3322 8624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1752g00002 33 242 Calmodulin-binding Proteins AT5G63870 30.677 9.35e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1752g00002 K06269 - cit:102610648 587.03