Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc173g00009 ATGGCCACACTATTATCCATGCCTTCTTCCTCTTCCACTGATCTCTCTGCCTCTCCAACCATTCCAAAATCCTTCACTGGCCTCTGTAAGCCCTTCCATTCAAGGGTACCTACTTCCATTCCCGTGCACTCTAGAAGAAGAAGACCTACCTTCTTTGTAAGGGCTACTGTTGTAAAGTGGCGATGTCCAAAGCAAACCACACCATACAACCCTGATGCCGGATTCGGTTGTCCAAAGAAAAGCCTGCCTCCCGATGCTGATGCCGATTTTGGATTTCCAAAGAAAACCATACCTCCCAACACTGATGCTGGCGTTGGATGTCCGAAGGAAACCATACCTCCTAACCCTGATACCAGTTTCCAAAAAATGGTCCTTTATTTAGAGTCCATTGGTCTCGACTCTTTCTCAGTTATTGAAAACCATCCGAAGTTGATCACTGCTTCCCTTGATGACATTAAATCCACGGTGGAATACATTATGTCCATGGATTTCACTGCAATCGAGTTTCGACGCATAGTTGGCATGTGTCCAGAAGTTCTTACCACCCATGTCTCGGACATCATACCCGTCTTTACCTTCCTTTTCCGCGAGGCTCATGTAAAAGGCTCAGATATTAAGAGGGTCATACATCGTCGCCCCAGGTTGCTTGTTTGCAGTGTCAATAACCAACTCCGTCCTACCCTCTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAGTAGGCACACTGATTTGCTATCATGTAGTGTCCAAGAAAAGCTTATACCCCGAATAGATTACTTCGAGAATATCGGGTTTTCTCGACGCGATGCAACCACAATGTTCCGAAGATTTCCTCCGCTGTTTTGTTATAGTATTAAGAATAACCTGGAGCCGAAATATAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTAAAGGAGTTTCCGCAGTATTTCTCGTTTAGCTTAGAGAACAGAATTAAGCCGAGGCATAAACGCTGTGTCGAAATGGGAGTGTGTTTCCCTCTCCCTGTATTGTTAAAGATGACTGAAATGAGCTTTCGGAATAGGTTAGATGTATGTGTAAATTCTTCAACACCCTTGAAAAATTCTCCTCTGTGGTGTAATAATCCTTCTGATATTCAAGTATAG 1140 0.4395 MATLLSMPSSSSTDLSASPTIPKSFTGLCKPFHSRVPTSIPVHSRRRRPTFFVRATVVKWRCPKQTTPYNPDAGFGCPKKSLPPDADADFGFPKKTIPPNTDAGVGCPKETIPPNPDTSFQKMVLYLESIGLDSFSVIENHPKLITASLDDIKSTVEYIMSMDFTAIEFRRIVGMCPEVLTTHVSDIIPVFTFLFREAHVKGSDIKRVIHRRPRLLVCSVNNQLRPTLYFLQSIGIEEVSRHTDLLSCSVQEKLIPRIDYFENIGFSRRDATTMFRRFPPLFCYSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKRCVEMGVCFPLPVLLKMTEMSFRNRLDVCVNSSTPLKNSPLWCNNPSDIQV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc173g00009 379 Gene3D Transcription termination factor 3, mitochondrial 184 358 IPR038538 -
Stsc173g00009 379 PANTHER CGI-12 PROTEIN-RELATED 125 355 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 FunFam Transcription termination factor MTEF1, chloroplastic 194 358 - -
Stsc173g00009 379 SMART mt_12 238 267 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 SMART mt_12 272 304 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 SMART mt_12 305 336 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 SMART mt_12 135 165 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 Pfam mTERF 204 350 IPR003690 GO:0003690|GO:0006355
Stsc173g00009 379 Pfam mTERF 121 197 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc173g00009 Stsc-Chr173 69363 72848 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc173g00009 mTERF 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc173g00009 K15031 - gmx:100794678 511.531