Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc172g00004 ATGTTTCCCAAAGAGAATAGTAGTAACGGCTACCATCACCAGCCGCCGCCGCCGCCGCCTCCTCCTCCTCTGCCGCTGGGAGTGGGTAACACTCACAGCCACAGAGAGCGAGCCCGTCGAGGCACGCGCAGGTCACGTGCTTCCCCAGACAGCCTCAGCCTTAGGGTTTATGACCAGCAACCGCAGCAGCAGCAGCAGCAGCAGCGAGCTCCTTGCACGGACTTCGACATGGCTTATTTCCATTCTTATGCTCACCTCGGTATCCACCAAGAGATGATCAAGGATCGCGTGAGGACTGAAACTTATAGAGAAGCAATCATGCAGCATCAGAGTTTCATTGCAGGCAAAGTCGTAGTTGACGTGGGATGTGGTACAGGAATCCTTGCAATATTTTGTGCTCAGGCTGGCGCAAAACGAGTATATGCAGTTGATGCCAGTGACATTGCCTTGCAGGCAAATGAAGTTGTGAAAGCAAATAACCTGTCTGATGTTATTGTTGTATTGCATGGACGGGTTGAGGATGTTGAAATCGATGAAGAGGTGGATGTTATTATTTCAGAATGGATGGGTTATATGCTTCTATATGAGAGCATGCTTGGAAGTGTTATTACTGCTAGAGATCGCTGGCTCAAACCCGGGGGTCTTATCCTTCCTTCAAATGCAACGTTGTACATGGCTCCTGTCACACATTCTGATAGATACAGTGAAAGCGTTGACTTCTGGCGCAATGTCTACGGAATTGATATGTCTGCCATGTTATCATTAGCAAAACAGTGTGCATTTGAAGAGCCTTCTGTGGAGACAATTACTGGTGAAAATATTTTGACATGGCCACATGTGGTGAAATATATTGATTGTTATTCTGTTACCATCCCTGAGCTAGAAACTGTAACAACAGGATTTAAGTTCAATTCAATGATGCGAGCACCACTGCATGGTTTTGCATTTTGGTTCGATGTTGAATTTAATGGGCCAGCAATACCAACAAGCGATTATCATTCATCAACTTCATTTACAGAAAATCATCTTGTGAATGGTAGTCAGAGGAAAAAGCGGACAAATCCAAGTGAAGCATTGGTCCTGTCCACTGCACCTGAGGACCCTCCAACGCATTGGCAGCAGACGTTGATATACTTTTATGATCCGATAGAATTGGAACAAGATCAAGCAATTGAAGGTCTAGTGACATTGACACAAAGTAAAGAGAATGCTCGCTTTATGAATATTCACCTTGAGTATACTTCGGGAGGGCGATCACATGTCAAAGAGTCTGTAATGAGATGA 1284 0.4533 MFPKENSSNGYHHQPPPPPPPPPLPLGVGNTHSHRERARRGTRRSRASPDSLSLRVYDQQPQQQQQQQRAPCTDFDMAYFHSYAHLGIHQEMIKDRVRTETYREAIMQHQSFIAGKVVVDVGCGTGILAIFCAQAGAKRVYAVDASDIALQANEVVKANNLSDVIVVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSNATLYMAPVTHSDRYSESVDFWRNVYGIDMSAMLSLAKQCAFEEPSVETITGENILTWPHVVKYIDCYSVTIPELETVTTGFKFNSMMRAPLHGFAFWFDVEFNGPAIPTSDYHSSTSFTENHLVNGSQRKKRTNPSEALVLSTAPEDPPTHWQQTLIYFYDPIELEQDQAIEGLVTLTQSKENARFMNIHLEYTSGGRSHVKESVMR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc172g00004 427 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 417 IPR029063 -
Stsc172g00004 427 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 76 427 IPR025799 GO:0016274|GO:0018216
Stsc172g00004 427 MobiDBLite consensus disorder prediction 47 71 - -
Stsc172g00004 427 MobiDBLite consensus disorder prediction 1 71 - -
Stsc172g00004 427 CDD AdoMet_MTases 118 217 - -
Stsc172g00004 427 Gene3D Vaccinia Virus protein VP39 73 218 IPR029063 -
Stsc172g00004 427 MobiDBLite consensus disorder prediction 12 27 - -
Stsc172g00004 427 Gene3D - 220 426 - -
Stsc172g00004 427 FunFam Protein arginine N-methyltransferase 6 72 218 - -
Stsc172g00004 427 Pfam Ribosomal protein L11 methyltransferase (PrmA) 114 188 - -
Stsc172g00004 427 FunFam Protein arginine N-methyltransferase 6 220 425 - -
Stsc172g00004 427 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 48 415 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc172g00004 Stsc-Chr172 21096 32951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc172g00004 79 427 C2H2 Transcription Factor Family AT3G12270 36.813 1.96e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc172g00004 K11437 - gmx:100809171 694.501