Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc171g00007 ATGGCAACAAGAATAATTAGAAGATGGTGTTTTTATAGGGACACACTCCCTGTGATGGTGATGATAGGGATAGAATGCAGCGACACTGGTTTGTACACTCTCTTCAAAGCAGCCACTAACACAGGCATGAGTGACCATGTCTTTGTTGCTTATGCTTATGCTATTGCCACCACTTTCCTCTTTCCTTCCCTCTTCTTTTCCAAAGGATCAAGAGTGGTTCCTCCCCTCAGCTTCTCCATACTAATCAAAATCATCCTTCTTGGCATCATAGGAAGCTCATCACAGGTATTGGGGTATGCTGGAATCAGATACAGCTCTCCAACACTTTCTTCATCAATCGGCAATCTCGTCCCTGCTTTCACCTTCTTGCTTGCCATCATCTTCAGGATGGAAAAGGTAGCTGCAAAGAGCAGAAGTAGCCAAGCTAAGGTAATAGGAAGCATTATATCAATAACAGGAGCATTTGCAGTGACATTCTACAAAGGTCCTTCTATCAACATTGCTCAAAGGCACCTCTCCTTATCAACTGAGCAACATGTTATTAGCATTCCCAATTCAGTTGATACAACTTGGGTCATTGCTGCAACTCTTCTCATAGCTGATTATTTACTTGCTTCATTATGGTACATTTTGCAGGTGGAAATCTTGAAGGCGTACCCTGATGAACTATCTATGGTGTTCTTTTATAATGTCACTGCAACTATTGTGTCAGTAACTGTAGCTTTATTCACAGAGAGAAATGCAAGTGCTTGGAAAATTGGACTTGACATATCATTGGTCTCCATTGTTTGCTCTGGAATATTTGGAAAGTTAATGAGCAATGCAGTTTATGCGTGGGCACTTCACTTGAAAGGAGCTGTGTATGTAACATCATTCAAGCCACTCACAATTGTTATTGCTATTGCCATGGGAGTTATGTTCCTTGGTGATACTCTTCACATTGGGAGTATAATTGGGGCGACAATAATATCAATTGGACTTTACACTGTATTGTGGGGAAAATCAAATGAAGAGGCAGAGGAAGATGTTATTGGTAATGGTAGCATAGAATCAGTAACTAGTGATGAGAATGTTCCATTGTTGCACAGCTATAACACTCCTTACTGTGGAAACAAAACAGATACCAATGTGTAA 1134 0.4056 MATRIIRRWCFYRDTLPVMVMIGIECSDTGLYTLFKAATNTGMSDHVFVAYAYAIATTFLFPSLFFSKGSRVVPPLSFSILIKIILLGIIGSSSQVLGYAGIRYSSPTLSSSIGNLVPAFTFLLAIIFRMEKVAAKSRSSQAKVIGSIISITGAFAVTFYKGPSINIAQRHLSLSTEQHVISIPNSVDTTWVIAATLLIADYLLASLWYILQVEILKAYPDELSMVFFYNVTATIVSVTVALFTERNASAWKIGLDISLVSIVCSGIFGKLMSNAVYAWALHLKGAVYVTSFKPLTIVIAIAMGVMFLGDTLHIGSIIGATIISIGLYTVLWGKSNEEAEEDVIGNGSIESVTSDENVPLLHSYNTPYCGNKTDTNV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc171g00007 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 160 - -
Stsc171g00007 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 335 - -
Stsc171g00007 377 Pfam EamA-like transporter family 30 158 IPR000620 GO:0016020
Stsc171g00007 377 Pfam EamA-like transporter family 195 331 IPR000620 GO:0016020
Stsc171g00007 377 PANTHER WAT1-RELATED PROTEIN 16 342 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc171g00007 Stsc-Chr171 53593 56562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc171g00007 8 366 Nodulin-like Gene Family AT3G28050 49.728 2.28e-120 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc171g00007 - - gmx:100790743 460.299