Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc171g00006 ATGGAAAGAAGATGGTCGTTCTACAAGAATCTGCTTCCAATCTTGTTGCTTGTAGGGATTGAAATTAATGATGTGGGGTTACTCACTTTGTTCAAAGCAGCAACCAATAAAGGCATGAGCAACCATGTGTTTGTTGCATATGCTTATGCTATTGCTACTCTTGTTCTTATTCCTGCACCTTTCATCTCTAAAAGATCAAGAGTGGTTCCTCCACTCAGTTTCTCCATACTTTCCAAAATTGTCCTTCTTGGGATCATAGGAAGCTCATCTCAAATTCTTGGGTATGCTGGAATTAGTTACAGTTCTCCAACACTTGCTTCATCAATTGGCAACTTAGTTCCTGCTTTCACTTTCTTGCTTGCAATCTTTTTCAGGATGGAAAAGATAAGTGTAAAAAGTAGAAGTAGTCAAGCTAAGGTAATGGGAAGCATAATATCAATAGGAGGAGCATTTGCGTTGACTTTCTACAAAGGTCCATCTATGACTATCAGCAACAATTCTCATACCAAAATTACCTCATTGCCATCACTTCTTCTTCATCAACCAATTAATACTCTCAAATCAGTGGACACAAATTGGGTTATTGCTGGAATTCTTCTAATCGCTGACTATTTACTGGTTTCACTATGGTACATTTTACAGGTGGATGTATTGAAGGATTACCCAGATGAACTAAGTATGCTGTTCTTTTACAATGTGACTTCAACAATCACATCTACAATTGTAGGTTCAATCATGGAACCAAATGCAAGTGCTTGGAAGATAAGCCTAGATATTTCATTGCTCTCCATTCTTTGCTCAGGTTTACTTGGAAAATTCTTGAGCAATGCAATTTATGCTTGGGTGATACACATAAAAGGCCCAGTGTATGTAACATCATTCAAGCCACTATCAATTGTTATTTCTATTGCCATGGGAGTTATGTTCCTCGGTGACACTCTTTATCTTGGAAGTGTAATTGGGGCCACAATAATATCGATTGGACTTTACACTGTATTGTGGGGCAAATCAAAAGAAGAGGCAGAGGAAGATGTTGTTGGTAGCATAGAATCAGTAACTACTAGTGATGAGAATGTTCCATTCTTGCACAGCTATAACACTCCTTACTGTGAAAACAAAAAAGATACCAATGTGTAA 1137 0.3773 MERRWSFYKNLLPILLLVGIEINDVGLLTLFKAATNKGMSNHVFVAYAYAIATLVLIPAPFISKRSRVVPPLSFSILSKIVLLGIIGSSSQILGYAGISYSSPTLASSIGNLVPAFTFLLAIFFRMEKISVKSRSSQAKVMGSIISIGGAFALTFYKGPSMTISNNSHTKITSLPSLLLHQPINTLKSVDTNWVIAGILLIADYLLVSLWYILQVDVLKDYPDELSMLFFYNVTSTITSTIVGSIMEPNASAWKISLDISLLSILCSGLLGKFLSNAIYAWVIHIKGPVYVTSFKPLSIVISIAMGVMFLGDTLYLGSVIGATIISIGLYTVLWGKSKEEAEEDVVGSIESVTTSDENVPFLHSYNTPYCENKKDTNV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc171g00006 378 PANTHER WAT1-RELATED PROTEIN 13 345 IPR030184 GO:0016020|GO:0022857
Stsc171g00006 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 154 - -
Stsc171g00006 378 Pfam EamA-like transporter family 32 153 IPR000620 GO:0016020
Stsc171g00006 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc171g00006 Stsc-Chr171 46059 51100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc171g00006 1 366 Nodulin-like Gene Family AT3G28050 48.670 4.27e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc171g00006 - - gmx:100790743 484.567