Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1705g00003 ATGATGAATTCCCCAATTCAGTCGTCGAGCCTGCTGTCACGGCAGTCATCAAAGTCGAAATCAAAGGCCGTAAGGCAGCAGCCGCCTCGCGTTGATTCCAGTGGATGCTGTCGTCGAGGCGTCAGAACTGTGGAGTCCACTACCAACCCCTTGGAGCTTCAGCAGCGCTATGATAGATTGGAAGCTAAGGTGGCAGGGTTGGAAAAGGAAGTACAGAGGCAAACAGAACTGCGAGTGATGTACAGGAAAAGAATGGAAAGAACACAAGACTACCTAAGGTACTGCCTCCAAGTTGCACAGGAAAAAGGAATCTTAGACCTCATTGTCCAAAACAAAGACGAATTTCAGCAAGCTATCAACTCCACTGTTCCTCCCATCCCTCCAACTCCAACCCCCATTCCTCCTCCTCACCACCCCAATCTTGCCGCCATCATTCATCAAGCCAAAATTGCTGGGTGGTATATTCATCCAACCGAGATTCAGTTGGCCGAGAAAATAGGCCAAGGAACCACGGCAGAGATTCACAGAGGAACATGGCGGGGATGCGAGGTGGCAGTGAAGTGCATAACAGCGGAGTTCTTCCACACAAATGCAAACGGCGTCGCATTCTTCGCTCAGGAGGTAGAAACCCTATCAAAGCAGCGCAACCGTTTCGTCCTCCACCTAATGGCCGCATGCCTTGACCCACCTCATCACGCCTGGCTCGTCACGGACTATCTCAGCACCACCCTCAAGGACTGGCTTCACGGCTCCGGCAACAACCGGAAGAAGGAAAGAACCGTGCCATTTCCTCCGTTGAAAGAGAGAGTAACCAAAGCATTGGAGATCGCACAGGGCATGCAGTATCTCCATGAGCAGAAGCCAAAGCTCGTTCACCGTGACTTGAAGCCCAGCAACATTTTCTTGGACGATGGCATGCATGTTCGTGTTGCTGATTTCGGACATGCTCGATTCTTGGATGATCATGAAATGGCTCTCACTGGAGAAACAGGAACATACGTTTATATGGCTCCTGAAGTGATCAAATGTGAGCCTTATAATGAAAAATGTGATGTATACAGCTTTGGTGTCATACTCAACGAGCTTCTAACTGGAAAATATCCCTTTGTTGAGACGGATTTGGGTCCCGCCAAGATTGCAATGGAAGTTGTGGAGGATAAGCTGAGGCCAATGCTTGCATCAGGCGAAGATGAGGAAGTGATTAATCTTGTATGCAGTTGCTGGGATGAGAATCCATCTAAAAGACCATCCTTTGCAACAATTACTCGGACGCTCAAAACCTATGTCAACCGACTTCATTCTTCAAGTTAA 1311 0.4882 MMNSPIQSSSLLSRQSSKSKSKAVRQQPPRVDSSGCCRRGVRTVESTTNPLELQQRYDRLEAKVAGLEKEVQRQTELRVMYRKRMERTQDYLRYCLQVAQEKGILDLIVQNKDEFQQAINSTVPPIPPTPTPIPPPHHPNLAAIIHQAKIAGWYIHPTEIQLAEKIGQGTTAEIHRGTWRGCEVAVKCITAEFFHTNANGVAFFAQEVETLSKQRNRFVLHLMAACLDPPHHAWLVTDYLSTTLKDWLHGSGNNRKKERTVPFPPLKERVTKALEIAQGMQYLHEQKPKLVHRDLKPSNIFLDDGMHVRVADFGHARFLDDHEMALTGETGTYVYMAPEVIKCEPYNEKCDVYSFGVILNELLTGKYPFVETDLGPAKIAMEVVEDKLRPMLASGEDEEVINLVCSCWDENPSKRPSFATITRTLKTYVNRLHSSS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1705g00003 436 SMART serkin_6 160 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1705g00003 436 ProSiteProfiles Protein kinase domain profile. 160 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1705g00003 436 MobiDBLite consensus disorder prediction 1 28 - -
Stsc1705g00003 436 ProSitePatterns Protein kinases ATP-binding region signature. 166 187 IPR017441 GO:0005524
Stsc1705g00003 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Stsc1705g00003 436 Pfam Protein kinase domain 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1705g00003 436 SUPERFAMILY Protein kinase-like (PK-like) 131 424 IPR011009 -
Stsc1705g00003 436 MobiDBLite consensus disorder prediction 1 37 - -
Stsc1705g00003 436 Gene3D Phosphorylase Kinase; domain 1 148 240 - -
Stsc1705g00003 436 CDD STKc_MAP3K-like 166 425 - -
Stsc1705g00003 436 Gene3D Transferase(Phosphotransferase) domain 1 262 436 - -
Stsc1705g00003 436 Coils Coil 50 77 - -
Stsc1705g00003 436 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 49 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1705g00003 Stsc-Chr1705 8592 11188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1705g00003 153 433 MAP Kinase Kinase Kinase AT2G17700 34.752 3.26e-47 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Stsc1705g00003 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1705g00003 - - ahf:112717789 704.516