Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1705g00002 ATGGATGCTACTAATAACAACAATAGTAAGCAGCAAGCTCCTCCAAGAGGCAGCGAAATAAGCATGTCGGAGAAGCAAACAACAACAACAACAGAAGTGATGGTTGCGATTCCAAGCGAGAGCCATGATTTTGCTGAATCTTTGACACCAAAGCATTATAGCAGACTTAACTCTCCTCTCACAATGCACAACAACGACAGCAATGATGCTGCTTCTTCAGTTTATGGAGCCTCAAAGTCACCACCTTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCCAAGCCCTAACAAGCCCCCAAGAATTCCCAATTCAAATGCAAACCTTGTCAGAAGGAAATCACTTTCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTATTCCGTTGATGGTTCTGTTATAGAAGAAACTAATATTAATGGCATTTCAACTTTGCAAGAACAGTTAACTGGTAGTGGTAACTCACCATATAGGAACTCATTCAAAGCATCATCGCCTAATAACAAACCTGGGACTGTTAATAGAACAGTTTCCATCACTCCCATCACTCCCAAGACGCCTTTGATGGCGTCTCCCGGTCCTGCCGGGGAGAATGAGGATGAGGATGAAATCATTTACAAGAAAGTAGAATTGAGTAAAGAGAAGCGTAAGAGACTGACCAATATGGTTTTGGTTGAATGCTTTGTGTTTGTGTGCCTTGCTGGTACCTTGATAGCTAGCTTGGCAGTTAAAAGGGTCAGGGCGACGATGATTTGGGGGTTGGGGATTTGGAGATGGTGTGTGCTTGTGTTGGTGACATTTTGTGGAATGCTAGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGATGAACTTTCTGCTGAGGAAAAAGGTGCTCTATTTTGTCCATGGGCTGAAGAAATGTGTCCAGGTCTTCATTTGGCTCGGTTTAGTTCTTCTCACATGGGTGCTGCTAATCAACCGTGGCGTGCCGCGATCTAAATTAGCCTCGAAAATCTTGGATGGTGTGACATGGACTCTGGTTTCCCTTCTAATTGGAGCATTCTTGTGGATGATAAAGACATTTTTGCTGAAGATTTTGGCATCGAGTTTCCACGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGATATTCCATCAGTACATTTTGCAGACTCTGTCTGGGCCTCCGCTTATCGAAGAGGCCGAGAAGGTTGGGGGATCATTAAGTATTGGTCAATTTAGCTTCAGGAGCACAACAGGTAAAGGTGGTACAAAGAAAGAGGTTATTGACATGGCAAAGCTTCATAAGATGAAACAAGAGAAAGTTTCAGCCTGGACTATGAAGCATTTGATAGATGCTGTGACAAATTCTGGTCTATCCACCATCTCTAATTCGCTAGATGAAAGTTTCTACGATGGATCAACTGAGCAAACTGATAAAGAGATTACAAATGAGATGGAAGCCACTGCTGCTGCCTATATCATCTTCAGGAATGTTGCTGCCCCTGGTTGCACGTATATTGACGAGTATGAACTGAGGAGGTTTATGATCAAGGAAGAAGTTGATTTAGTATATCCTCAATTGGCAAGTGCAGACACAGGGCAAATTACTAGAAAGTCATTAGCAGATTGGGTGTTGAAGGTATATCAAGAGCGAAAAGCATTGGCGCATGCCTTAAGCGATACGAAAACAGCTGTAAGACAATTGAACAAACTTGTGACAGGGATCCTAGTGGTGGTGACCATAGTAGTTTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTTTTCCTCTCATCCCAGCTAATTCTCGCCACTTTCATGTTTGGAAATACATGCAAGAACATTTTTGAAGCTATCATCTTTGTGTTTGTGATTCATCCGTTTGATGTTGGCGACCGCTGTGTTGTAGATGGCGTGGAGTTATTGGTTGAAGAAATGAATATACTGACAACAGTATTCTTGAAGCTAAACAATGAAAAGGTGTACTATCCAAACTCAGTCCTTGCCATGAAACCAATTAGCAACTATTACAGAAGCCCGGATATGGGTGATGGAGTAGAATTCGCCATTGATTTCTCGACGCCAGCAGAGAAGATTGGTGCACTGAAAGAAAAAGTAAAGAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAATCATGGGTTACAAGTGAAGGAGATTGAGAATGTAAACAAGCTCAAGATGGGTGTGTATGTGGTACACACAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGAAGAACCGAACTAGTGATTGAATTAAAGAAGATACTTGAAGAGCTAGATATCAGATACAACCTTCTTCCACAAGCTGTTCACGTTAGCCATGTTGAATCAAATACAAGTCCACTCAAGAGATGA 2403 0.4191 MDATNNNNSKQQAPPRGSEISMSEKQTTTTTEVMVAIPSESHDFAESLTPKHYSRLNSPLTMHNNDSNDAASSVYGASKSPPLNCASPEIRFMPSPNKPPRIPNSNANLVRRKSLSRSVYSKPKSRFGEQPYSVDGSVIEETNINGISTLQEQLTGSGNSPYRNSFKASSPNNKPGTVNRTVSITPITPKTPLMASPGPAGENEDEDEIIYKKVELSKEKRKRLTNMVLVECFVFVCLAGTLIASLAVKRVRATMIWGLGIWRWCVLVLVTFCGMLVTRWFMHIVVFLIEMNFLLRKKVLYFVHGLKKCVQVFIWLGLVLLTWVLLINRGVPRSKLASKILDGVTWTLVSLLIGAFLWMIKTFLLKILASSFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSLSIGQFSFRSTTGKGGTKKEVIDMAKLHKMKQEKVSAWTMKHLIDAVTNSGLSTISNSLDESFYDGSTEQTDKEITNEMEATAAAYIIFRNVAAPGCTYIDEYELRRFMIKEEVDLVYPQLASADTGQITRKSLADWVLKVYQERKALAHALSDTKTAVRQLNKLVTGILVVVTIVVWLLLMEIATTKVLVFLSSQLILATFMFGNTCKNIFEAIIFVFVIHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDGVEFAIDFSTPAEKIGALKEKVKRYLERNPQYWHPNHGLQVKEIENVNKLKMGVYVVHTMNFQEFGEKNKRRTELVIELKKILEELDIRYNLLPQAVHVSHVESNTSPLKR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1705g00002 800 MobiDBLite consensus disorder prediction 1 31 - -
Stsc1705g00002 800 MobiDBLite consensus disorder prediction 154 190 - -
Stsc1705g00002 800 SUPERFAMILY Sm-like ribonucleoproteins 622 681 IPR010920 -
Stsc1705g00002 800 Gene3D - 632 681 IPR023408 -
Stsc1705g00002 800 MobiDBLite consensus disorder prediction 54 80 - -
Stsc1705g00002 800 MobiDBLite consensus disorder prediction 102 123 - -
Stsc1705g00002 800 Pfam Mechanosensitive ion channel 573 778 IPR006685 GO:0016020|GO:0055085
Stsc1705g00002 800 PIRSF Memb_At2g17000 1 799 IPR016688 -
Stsc1705g00002 800 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 792 IPR016688 -
Stsc1705g00002 800 MobiDBLite consensus disorder prediction 54 132 - -
Stsc1705g00002 800 MobiDBLite consensus disorder prediction 154 204 - -
Stsc1705g00002 800 FunFam Predicted mechanosensitive ion channel 632 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1705g00002 Stsc-Chr1705 3414 6356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1705g00002 56 789 Mechanosensitive Ion Channel Family AT5G12080 58.277 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1705g00002 K22048 - gmx:100803107 1162.13