Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1704g00001 ATGGATTCCAAGATCAAGGCTGGTCAAGAAGGGTTGTTGCACCAGAGAATCTCTGCATTGCTTGAGTTTTCAGCCTCAGATGATGTAAACGGGTTCAAGGATGCTATTGAGAAAGAGGGTCATGATGTTGGTGAGGTTGGACTATGGTATGGTAGGAGAATTGGAACAAAGGAACTTGGTTACGAAGAGAGAACCCCTCTTATGATTGCTGCAATGTTCGGAAGCAAGAATGTGTTGTCTTATATTCTCAAAACAGGCAAAGCTGATGTCAACAAATCTTGCGGCTGCGATTCAGCCACCGCTCTCCACTGCGCCGTCGACGGAGCCTCCCCAGCCTCCGCCCAGGTCATCAAGCTCTTGCTGGATTCCTCCGCCAATGCTAATGCCCTCGACGCGAGGGGAAACCGGTCCCATGACTTGGCTCTCTCCATGCCCCACATCTACAGCGCCCGAAAGAAGGCCGTACAATCGATTCTAGAAGGCGCGAACAATGTTTATAAAAAGGAGTCAATAGCAACGGCAGCATCCACAACAGCAACCAGCACAACGGGAGCAGCAACGGAAAGAACGAAGGCAGAGTTTCCTCTGTCTCCGCGGTATAAAGAGTTTCCATTTGACTACTCTTTGCCGGACATAAAGAACGGGATATACAGCACGGACGAGTTTAGAATGTATACCTTCAAAGTGAAGCCATGTTCGAGGGCGTATTCACACGATTGGACAGAGTGTCCTTTCGCGCATCCGGGGGAGAATGCTAAGAGGCGTGATCCAAGAAAGTACCAGTACAGCTGCGTCCCTTGTCCCGAGTTTCGCAAGGGAAGCTGCAGCAAAGGAGATTCCTGCGAATACGCGCACGGAATCTTCGAGTGCTGGCTTCACCCTGCGCAATACCGGACAAGGCTCTGCAAGGACGAGATGGCTTGCACGAGAAGAGTTTGTTTCTTCGCTCACAAGCCAGAAGAGCTTCGCCCGCTTTACGCCTGTTCCGGCTCTGCATTGCCTTCCCCGACTTCTTATTCGCCAGGTGCCACTTCCTCATTGGACATCTGCTCATCCCCACCTCCCGCCGCCGCTGTCGCTGGCGGCGGATCTTCTCCGGGATGGCCAACCGCTCAAACTAATAAGCTTCCTAAAAGCAGGCTGAATCTCGCGCTGAGCGCGAGAGATGTTAATCTTGACATCCAGTCGATCGGACTGGAAAGCCGTCGACTGATGCAGAAGATAATGATGGAAGAGATGGCGTCAGCATTATCACCAAACTCTTCAAGCTGGATTAACTCTTTGCCGACGAGTCCGTCTTTCGGTTCTCCGGTGCCTTCTCCAACAAGTATTTGGAGTAACTCCCCCAACTATTCTCCTTCACCTTCAAAAGTCATTGGATCGGCTACATACGGCCTGGATCTCTCCGGTGCCGCTGCCTCAAGAACCAGCGATTTCTCGATCCGGAGTCCGAGCGAACTTCCTTCTCCATCTATGGAATCGCCGTCGTCTTCTACCTTGTTTGGTTGGGGCTCCCCGGATGGGAAATTCGATTGGTCTATTCGCAGAGACGAATTGAAGAAGATGAACAAGTCTGGTTCTTTCGCCTTCCGAAGCAGTGCTAATCCTGTTACGACTCCGGAGCTGGCGGAGGGGGATGGTATTGATGGTGAACCAGATGTGTCTTGGGTTAGTTCACTTGTCAAGGATTCTAACAACTACTCCACCATGTTAACACATTAA 1722 0.5116 MDSKIKAGQEGLLHQRISALLEFSASDDVNGFKDAIEKEGHDVGEVGLWYGRRIGTKELGYEERTPLMIAAMFGSKNVLSYILKTGKADVNKSCGCDSATALHCAVDGASPASAQVIKLLLDSSANANALDARGNRSHDLALSMPHIYSARKKAVQSILEGANNVYKKESIATAASTTATSTTGAATERTKAEFPLSPRYKEFPFDYSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYQYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDEMACTRRVCFFAHKPEELRPLYACSGSALPSPTSYSPGATSSLDICSSPPPAAAVAGGGSSPGWPTAQTNKLPKSRLNLALSARDVNLDIQSIGLESRRLMQKIMMEEMASALSPNSSSWINSLPTSPSFGSPVPSPTSIWSNSPNYSPSPSKVIGSATYGLDLSGAAASRTSDFSIRSPSELPSPSMESPSSSTLFGWGSPDGKFDWSIRRDELKKMNKSGSFAFRSSANPVTTPELAEGDGIDGEPDVSWVSSLVKDSNNYSTMLTH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1704g00001 573 FunFam Zinc finger CCCH domain-containing protein 66 219 287 - -
Stsc1704g00001 573 ProSiteProfiles Ankyrin repeat profile. 97 132 IPR002110 GO:0005515
Stsc1704g00001 573 SMART ANK_2a 97 129 IPR002110 GO:0005515
Stsc1704g00001 573 SMART ANK_2a 62 92 IPR002110 GO:0005515
Stsc1704g00001 573 SUPERFAMILY Ankyrin repeat 50 147 IPR036770 -
Stsc1704g00001 573 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Stsc1704g00001 573 SMART c3hfinal6 296 319 IPR000571 GO:0046872
Stsc1704g00001 573 Gene3D - 13 181 IPR036770 -
Stsc1704g00001 573 Gene3D - 262 324 - -
Stsc1704g00001 573 MobiDBLite consensus disorder prediction 430 452 - -
Stsc1704g00001 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 286 IPR000571 GO:0046872
Stsc1704g00001 573 Pfam Ankyrin repeats (3 copies) 55 129 IPR002110 GO:0005515
Stsc1704g00001 573 MobiDBLite consensus disorder prediction 477 500 - -
Stsc1704g00001 573 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Stsc1704g00001 573 MobiDBLite consensus disorder prediction 530 554 - -
Stsc1704g00001 573 PANTHER UNKEMPT FAMILY MEMBER 22 564 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1704g00001 Stsc-Chr1704 701 2422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1704g00001 17 564 C2H2 Transcription Factor Family AT5G12850 39.628 6.56e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc1704g00001 Ank_2 3.1e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1704g00001 - - aip:107616248 875.93