Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc16g00036 ATGAAAACTGAGAACAACAATGGGTTACAATCAGATTACAACAACAACTACCAGCCACAACCTCAGACCCTAAGCAGAAGATCAGATGATGGTTACAACTGGAGAAAATATGGTCAGAAACAAGTGAAGGGGAGTGAGAATCCAAGGAGTTACTATAAATGCACGTTCCCAAATTGCCCTACAAAGAAGAAAGTTGAGAGGTCCTTGGATGGACAAATTACTGAGATTATTTATAAGGGTACTCATAATCACCCTAAGCCTCAGAACACTGGGAGAAACTCTTCATCTTCTTCTTCTACTCCTGCTGCTCTTGCAAATGTCCCCTACAATCAAATGAACAACACAGATGTTCCTGATCATCAATCTTATGCCACACATGGTAGTGGACAAATGGATTCTGTTGCCACCCCCGAGAACTCCTCAATTTCCGTTGGGGATGATGATTTTGAGCAAAGCTCTCAGAGTGTAAATCAGGTGGAGATAACTCCTCAATTGTGGTTTTAA 504 0.4147 MKTENNNGLQSDYNNNYQPQPQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIIYKGTHNHPKPQNTGRNSSSSSSTPAALANVPYNQMNNTDVPDHQSYATHGSGQMDSVATPENSSISVGDDDFEQSSQSVNQVEITPQLWF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc16g00036 167 ProSiteProfiles WRKY domain profile. 29 87 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc16g00036 167 SMART WRKY_cls 28 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc16g00036 167 MobiDBLite consensus disorder prediction 83 167 - -
Stsc16g00036 167 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 143 IPR044810 GO:0003700
Stsc16g00036 167 FunFam WRKY transcription factor 18 88 - -
Stsc16g00036 167 MobiDBLite consensus disorder prediction 1 167 - -
Stsc16g00036 167 SUPERFAMILY WRKY DNA-binding domain 27 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc16g00036 167 MobiDBLite consensus disorder prediction 1 28 - -
Stsc16g00036 167 Pfam WRKY DNA -binding domain 29 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc16g00036 167 Gene3D WRKY domain 14 88 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc16g00036 Stsc-Chr16 254509 255012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc16g00036 26 160 WRKY Transcription Factor Family AT2G38470 61.268 1.71e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc16g00036 WRKY 2.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc16g00036 K13424 - aip:107621821 265.774