Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc16g00027 ATGAAGAGGAAGAGGAAAAGCCAGAGGAGGATTGGGAAGAAGGAGAGGAACAAGTTCACGATGGAGAAGGGCACTCTTTCAACCACCTCCCACCTTCATCTTCAGCTAGGTCAAGTCTCTCTCTTTCCCCTCCTTCATCCTCCGTCTTCTTCCACTTCTGTTTCCGCACCTTCTTCCTGCTTTCAGAGCCTTCTAGATGCTGAATCTCATCGCCCTAACTCTCCCGCTTCTTCCTCCACCGAAAACGACGCCCTCGACGACAGGGACTTTATTCTTAGCCAGGACTTCTTTTGCACTCCAGATTATATTACGCCGGATAATCAGAACACTTTCAACGGCTTCGATTTCAATGAGGAGAATACCCCTTGCCCCAAATCACCGGAGAAGCTCAACACTTCAAAAAGCAAGAGGTGCCGATTGGATGCTATCTCAGTAAATCCTCTCAGTCCAAACTTTTCTTATGACAATCAACAAGTTGTTGAGCTTGGTAAGGACTCTGATATGGAGGAAGTAGCTGCTGAGAAAACAGTAGCAGCTGATACACCAAAGCCCCAAAATTATGTGTCACATTCTGCAGTTGCATTGCGCTGCAGGGTTATGCCTCCTCCCTGCATCCAGAATCCCTATTTCAAACATGTCTCAGAAAAGGAGACAGACCCCTTTGGAAACCAAAGGTTAAAATGTGCAGGTCTCTTCCCTGCAGTAACTGGTGAGGATGGTATTTCACGCTATCACAATGATTTTCATGAGATTGAGCAAATTGGCAGAGGGCACTTTAGTAGTGTTTTCAAAGTATTAAAACGAATAGATGGTTGCCTTTACGCTGTGAAACGCAGTGCCAGACAGTTAATTCTGGAAACAGAAAGGAGAAAAGCTTTGATGGAAGTTCAAGCATTGGCTGCCTTAGGTTCTCATGCAAACATAGTGGGGTACTACTCTTCATGGTTTGAAAATGAACAGCTGTATATCCAAATGGAGCTTTGTGATCACAGCTTATCCATAAAGAAATGCTCTGCTTCGTTCACAGAAAGACAAGTGTTAGAGGCTCTATATCAGGTTGCCAATGCACTGAAATTTATTCACGAGAAGGGAATAGCTCATTTAGATGTCAAGCCTGATAATATTTATGTAAAAAATGGTGTATATAAGCTTGGTGATTTTGGATGTGCAACTCGCCTTGACAATAGCCTCCCAGTTGAGGAGGGAGATGCACGTTATATGCCTAGAGAAATCCTTAATGAGAATTATGAGCACCTTGACAAAGTTGATATCTTTTCTTTGGGAGTTTCTATGTATGAATTCATTCGAGGATTGCCTTCGCCAGAATCAGGATGTCAATTTTTTAATCTTAAAGAGGGAAAGCTTCCACTTTTGCCTGGCCACTCATTACAATTCCAAAACTTGCTCAAGGCCATGATGGATCCTGATCCAGTTAAACGTCCTTCTGCAAGGGAGTTGATAGAGAATCCAATTTTCGACAAGACCATTAGAGCAGCCAAAATTTGA 1506 0.4316 MKRKRKSQRRIGKKERNKFTMEKGTLSTTSHLHLQLGQVSLFPLLHPPSSSTSVSAPSSCFQSLLDAESHRPNSPASSSTENDALDDRDFILSQDFFCTPDYITPDNQNTFNGFDFNEENTPCPKSPEKLNTSKSKRCRLDAISVNPLSPNFSYDNQQVVELGKDSDMEEVAAEKTVAADTPKPQNYVSHSAVALRCRVMPPPCIQNPYFKHVSEKETDPFGNQRLKCAGLFPAVTGEDGISRYHNDFHEIEQIGRGHFSSVFKVLKRIDGCLYAVKRSARQLILETERRKALMEVQALAALGSHANIVGYYSSWFENEQLYIQMELCDHSLSIKKCSASFTERQVLEALYQVANALKFIHEKGIAHLDVKPDNIYVKNGVYKLGDFGCATRLDNSLPVEEGDARYMPREILNENYEHLDKVDIFSLGVSMYEFIRGLPSPESGCQFFNLKEGKLPLLPGHSLQFQNLLKAMMDPDPVKRPSARELIENPIFDKTIRAAKI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc16g00027 501 ProSitePatterns Protein kinases ATP-binding region signature. 254 277 IPR017441 GO:0005524
Stsc16g00027 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Stsc16g00027 501 MobiDBLite consensus disorder prediction 109 129 - -
Stsc16g00027 501 MobiDBLite consensus disorder prediction 1 26 - -
Stsc16g00027 501 Gene3D Transferase(Phosphotransferase) domain 1 327 497 - -
Stsc16g00027 501 SUPERFAMILY Protein kinase-like (PK-like) 241 494 IPR011009 -
Stsc16g00027 501 MobiDBLite consensus disorder prediction 65 85 - -
Stsc16g00027 501 ProSiteProfiles Protein kinase domain profile. 248 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc16g00027 501 FunFam Wee1-like protein kinase 327 496 - -
Stsc16g00027 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 84 492 - -
Stsc16g00027 501 MobiDBLite consensus disorder prediction 65 81 - -
Stsc16g00027 501 FunFam WEE protein kinase 238 326 - -
Stsc16g00027 501 Gene3D Phosphorylase Kinase; domain 1 238 326 - -
Stsc16g00027 501 Pfam Protein kinase domain 248 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc16g00027 501 MobiDBLite consensus disorder prediction 109 131 - -
Stsc16g00027 501 SMART serkin_6 248 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc16g00027 Stsc-Chr16 200456 203423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc16g00027 4 494 Core Cell Cycle Gene Families AT1G02970 61.055 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Stsc16g00027 Pkinase 8.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc16g00027 K06632 - gmx:547742 750.74