Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1682g00002 ATGACATGTGCATCAATAGAAGAACAAGGCTCATCTTCAAACCCAAACAACAAGAGGAAGAAGAAAGGTAATGATAGTAGCATGAACAATAATAACAATAACAATAATAAGAAGAAGAATAAGGGAGTGATGAAACTTTCAACTGACCCACAAAGTGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGCAGCAAGATGGACACTGTGTCTATGTTGGAGGAAGCCATTCACTATGTTAAGTTCCTCAAGGCTCAGATTTGGCTCCACCAAGCTCTCATGATGAACTATGATTCTGTGGATAACAATACTAATGATCAGTGCTATCATTATTATTATTGTTACCCTGCTGCTTCTGATCATGAAATTGTTCCTCTTCATCAGCAACAAAATGCTTCATCTTCATCAGCAGTTTTTGAGACCTTATTACCAGAGCTACCATTATCTCAGTGTTGCATCCAAGGTGATGATAATGAAGGCACTACTACTACTATTGATGGTGCTGCTGCTTTGAAACATTGGCCACCTCCTTATTAG 573 0.3997 MTCASIEEQGSSSNPNNKRKKKGNDSSMNNNNNNNNKKKNKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKAQIWLHQALMMNYDSVDNNTNDQCYHYYYCYPAASDHEIVPLHQQQNASSSSAVFETLLPELPLSQCCIQGDDNEGTTTTIDGAAALKHWPPPY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1682g00002 190 Gene3D - 49 118 IPR036638 GO:0046983
Stsc1682g00002 190 FunFam Transcription factor LAX PANICLE 49 112 - -
Stsc1682g00002 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Stsc1682g00002 190 SMART finulus 52 101 IPR011598 GO:0046983
Stsc1682g00002 190 Pfam Helix-loop-helix DNA-binding domain 56 95 IPR011598 GO:0046983
Stsc1682g00002 190 CDD bHLH_AtIND_like 47 107 - -
Stsc1682g00002 190 MobiDBLite consensus disorder prediction 26 47 - -
Stsc1682g00002 190 MobiDBLite consensus disorder prediction 1 55 - -
Stsc1682g00002 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 106 IPR036638 GO:0046983
Stsc1682g00002 190 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 36 144 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1682g00002 Stsc-Chr1682 9466 10118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1682g00002 37 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.905 5.75e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc1682g00002 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1682g00002 - - adu:107475363 259.61