Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc166g00014 ATGAGATGCCCTCATCCATCTTGCGAGGCTTCTTTGGAGATCGATATGATTCAGCGATTCGCCAGTGAGGCTAACAAGAACATGTACGATCGTTTCTTGTTACGCTCTTTTGTGGAAACCAGAAAGAATATAAAGTGGTGTCCGAGTCCCGGTTGCGATCTTGCTGTTCTTTATGAATCTGATGGAAACAGTGCTATCAAAAATGTTGAAGCAAGTTGCTGTAAAGGGCATAGATTTTGCTGGAGATGCCTTGAAGATGCTCATAGACCTGTGAGTTGTGAAATGGTGGCTGAGTGGAATAAGAAGAACCAGCATGAAATTCAGAGCGTGGTTTGGATCTCTGCTTTCACTAAAAAATGCCCTAATTGTGGGGTCAATATTGAGAAGAACGAGGGTTGCATGCACATGACTTGCACTGTTTGCTTCTACCAATTTTGCTGGCTATGTCTTTCAGATTGGCATCTGTGTTCTCGCAATGGTTGTAACCGTTTTCCAACCCAGGATACTGAAAGGTCCATAATGAACAATGCAGATGCATCTTTGGACTTGCAGAGGTACACTCACTATTATGAACGTTGGTTTACCAACGAATTCTCAAGGAAAAGATGTACTGAGATCATGGAAAAGCATCTGAATGATGATAAAATAAGAATGATGTGCAATGAATTTGAAAAGGATAAAGAAGATTTTGATTTTCTGAAGAAGGCATGGGAAGAGGTAACTAGGTGCAGGAACATACTGAAGTGGACTTATGCATATGGTTACTTCATCCCTGCGGATGAGAAAGCTAAGAAGGAGTTGTTCGAGCACACACAAGGCGTGGCTGAGAATGCATTGGAGAAACTTCACAAGTTTGCTGAAACAATGCTGTTGGAAGTCCTGAACAAGAAGAAAGACGGGTTCGATAGGAATAGTCTGGAATTGTCTGAACTGACTAAAGTGACCCAGAATTTCTTTGACAACATGGTGACTCAATTAGAGAATAAAGGGCTTGATGATGTGAGTGTGAAAACTTATGCTGAAATCTCCTCATCCTCGTCGTCTTTTTCGGCGCCACGAGGTCTTGTGAGGGATGGAATGACAGAGATTGGCATCAAGAGATGCATTTCTTGCGGGTGCTACGGGCTTCGGAACATTCTAAAGTGTGGCTGTGTTGATAATAATGCGAATGTGCGTAGTAGAACTCAGATACATGAAGTTCACTTCCAAGAATTAAACGAGCCTGTTGAGTGGGAGATATGTAGTGGTCCTCGTATTAGTACTCCGATACGTGTTTGCCCCCAAGTTGTGTGGGAGCAGCTATGA 1305 0.4268 MRCPHPSCEASLEIDMIQRFASEANKNMYDRFLLRSFVETRKNIKWCPSPGCDLAVLYESDGNSAIKNVEASCCKGHRFCWRCLEDAHRPVSCEMVAEWNKKNQHEIQSVVWISAFTKKCPNCGVNIEKNEGCMHMTCTVCFYQFCWLCLSDWHLCSRNGCNRFPTQDTERSIMNNADASLDLQRYTHYYERWFTNEFSRKRCTEIMEKHLNDDKIRMMCNEFEKDKEDFDFLKKAWEEVTRCRNILKWTYAYGYFIPADEKAKKELFEHTQGVAENALEKLHKFAETMLLEVLNKKKDGFDRNSLELSELTKVTQNFFDNMVTQLENKGLDDVSVKTYAEISSSSSSFSAPRGLVRDGMTEIGIKRCISCGCYGLRNILKCGCVDNNANVRSRTQIHEVHFQELNEPVEWEICSGPRISTPIRVCPQVVWEQL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc166g00014 434 SUPERFAMILY RING/U-box 101 156 - -
Stsc166g00014 434 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 250 IPR031127 GO:0004842|GO:0016567
Stsc166g00014 434 ProSiteProfiles TRIAD supradomain profile. 1 165 IPR044066 -
Stsc166g00014 434 Pfam IBR domain, a half RING-finger domain 28 93 IPR002867 GO:0008270
Stsc166g00014 434 Pfam IBR domain, a half RING-finger domain 111 155 IPR002867 GO:0008270
Stsc166g00014 434 CDD BRcat_RBR_ANKIB1 34 102 - -
Stsc166g00014 434 Pfam Ariadne domain 178 336 IPR045840 -
Stsc166g00014 434 Gene3D - 89 333 - -
Stsc166g00014 434 SUPERFAMILY RING/U-box 29 100 - -
Stsc166g00014 434 SMART ibrneu5 27 93 IPR002867 GO:0008270
Stsc166g00014 434 SMART ibrneu5 100 161 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc166g00014 Stsc-Chr166 77276 78796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc166g00014 1 334 C3H Transcription Factor Family AT2G31510 41.595 5.23e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc166g00014 - K11968 aip:107632220 605.52