Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc166g00013 ATGGGAACTTTCTTGTTCCAAAACCAAGTTCCTCATCCTGAACCTGAAGAAGACGATGAGTACCTCATCGTTGCCGCAGCAGAGATCAAAGGATCATCACCATCCACCACACAAACCAGCTGCTTCACTTCTCTGACCGAGTCCCGTATCAGGAAGTTTCAAACCACTGAAATCAACGAGGTATCATCTGTTCTTCTCATACCATTCTCAGATGCGTGCCTTTTGTTAATCCACTATGGCTGGAGCGCCATGAAGGTCCACGAAGCTTGGTTCGAAGACGAGCAAAGAGTTCGAGAGCTTGTTGGCATCAACTACTCTGAAGAACTAATCCAGAGTGTTACTTGCGAGATCTGCTTTGATGATTCAGTTTGGTACAAGAAAGTGGAGTATGCCAGGTGTGGCCACGGTTACTGCGTCGATTGCTGGAAACGCTACATCGACGAGAAGATTCTAGAAGGTCCTCATGTGTCTCTCAAACCGATGAGATGCCCTCATCCATCTTGCGAGGCTTCGTTAGAGATCGATATGATTCGGCGATTCGCCAGCGAGGCTAACAAGAACATGTACGATCGTTTCTTGTTAAACTCTTTTGTGGAAACCAGAAAGGATATAAAGTGGTGTCCTAGTCCCGGTTGGGATCTTGCTGTTCTTTATGAATCTGATGGAAACCGCGCTAACAAAAATGTTGAAGCAAGTTGCTGTAATGGCCATAGATTCTGCTGGAGATGTGGTGAAGAAGCTCATAGACCTGCGAGCTGTGAAACGGTGGCCGAGTGGAAGAAGAAGAACCAGGAAGATTTTCAGAGCGTGACTTGGATCACTTCTTTCACCAAGAAATGCCCTGCTTGTGGGGTCCACATTGAAAAGAGCGGGGGTTGCATGAACATGAGATGTACTGTTTGCCGCTGCCAATTTTGCTGGCTGTGTCTTTCTGCTTGGCCTCTGTGTTCTGCCTATGGTTGTAACCGTGTCTATGGTTGTAACCGTTTCCAACCCCAGAATACTGAAAGGTCCATAATGAACAATGGAAATGCATCTTTGGACTTGCCTAGGTACACTCACTATTATGAACGTTGGTTTACCAACGAATTCTCAAGGAAAAAGTGCACTGAGGTCATGGAAGAGTATCTGAATGATGAGAATATAAGAATGATGTGCAACGAATTTGAAAGGGATGAAGAAGATTTTGATTTTTTGAAGAAGGCTTGGGAAGAGGTAATCAGGTGCAGGAACATACTGAAGTGGACTTATGCATATGGTTACTTCATCCCTGCGGACGAGAAAGCTAAGAAGGAGTTATTCGAGCACACACAAGAGGTGGCTGAGAATGCATTGGAGAAACTTCACAAGTTTGCTGAAACAATGCTGATGGAAATCCTGAACAAGAAGAAAGATGGGTTCGATAGGAACAGTCTGGAATTGTCTGAACTGACTAAAGTAACCCAGAATTTCTTTGACAACATGGTGACTCAATTGGAGGATAGAGGGCTTGATGATGTGAATGTGAAGAGTTATGCTGAAACCTCCTCATCCTCATCCTCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCGTCTTCTTCGTCTCCTCAAGGTGTTTTGATCAGGGATGGAATGACAGAGATTGGCCTCAAGAGATGCAATTCTTGCGGTTACTACCGGCTTGGGAACATTCCAGAGTGTGGCTGTGTTGATAATAATGTGAATGTGCGTAGTAGAAATGGGTTACATGAAGAGTGTGTTGTGCATGAAGTTCCCCTTCAAGTCCAAAGGCTCCAAGAATTTGAAGAGTGTGCTGTGCGGAGGATATATAGGTGTCCTCGGTTTAATCCGATACGTGTTCCCCCCCATGTTGTGCGGGAGCTATGA 1875 0.4491 MGTFLFQNQVPHPEPEEDDEYLIVAAAEIKGSSPSTTQTSCFTSLTESRIRKFQTTEINEVSSVLLIPFSDACLLLIHYGWSAMKVHEAWFEDEQRVRELVGINYSEELIQSVTCEICFDDSVWYKKVEYARCGHGYCVDCWKRYIDEKILEGPHVSLKPMRCPHPSCEASLEIDMIRRFASEANKNMYDRFLLNSFVETRKDIKWCPSPGWDLAVLYESDGNRANKNVEASCCNGHRFCWRCGEEAHRPASCETVAEWKKKNQEDFQSVTWITSFTKKCPACGVHIEKSGGCMNMRCTVCRCQFCWLCLSAWPLCSAYGCNRVYGCNRFQPQNTERSIMNNGNASLDLPRYTHYYERWFTNEFSRKKCTEVMEEYLNDENIRMMCNEFERDEEDFDFLKKAWEEVIRCRNILKWTYAYGYFIPADEKAKKELFEHTQEVAENALEKLHKFAETMLMEILNKKKDGFDRNSLELSELTKVTQNFFDNMVTQLEDRGLDDVNVKSYAETSSSSSSSSSSSSSSSSSSSSSSSPQGVLIRDGMTEIGLKRCNSCGYYRLGNIPECGCVDNNVNVRSRNGLHEECVVHEVPLQVQRLQEFEECAVRRIYRCPRFNPIRVPPHVVREL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc166g00013 624 MobiDBLite consensus disorder prediction 507 535 - -
Stsc166g00013 624 ProSiteProfiles Zinc finger RING-type profile. 115 164 IPR001841 -
Stsc166g00013 624 SUPERFAMILY RING/U-box 261 331 - -
Stsc166g00013 624 Pfam IBR domain, a half RING-finger domain 188 253 IPR002867 GO:0008270
Stsc166g00013 624 CDD BRcat_RBR_ANKIB1 194 262 - -
Stsc166g00013 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 199 IPR013083 -
Stsc166g00013 624 ProSiteProfiles TRIAD supradomain profile. 111 331 IPR044066 -
Stsc166g00013 624 FunFam RBR-type E3 ubiquitin transferase 110 201 - -
Stsc166g00013 624 SUPERFAMILY RING/U-box 112 196 - -
Stsc166g00013 624 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 416 IPR031127 GO:0004842|GO:0016567
Stsc166g00013 624 SMART ibrneu5 261 316 IPR002867 GO:0008270
Stsc166g00013 624 SMART ibrneu5 187 253 IPR002867 GO:0008270
Stsc166g00013 624 SUPERFAMILY RING/U-box 189 260 - -
Stsc166g00013 624 Gene3D - 249 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc166g00013 Stsc-Chr166 65264 67355 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc166g00013 58 534 C3H Transcription Factor Family AT2G31510 40.122 7.69e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc166g00013 K11968 - aip:107632220 872.078