Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc166g00012 ATGGACAAAAGCCAATCAAAGGATCTCCATATCCAAGGGTTTATTTCAGATGCAATACATCAAAGGGGTGTATGTTCAACGAAGAAGCAAGTCGAGAGATGCAGGACAGATGCCTCAATGCTCATAATCACTTACACCTCTACACATAACCACCCTTCTCCTGATGAAATATTCTCCACTGCGTATTTATCACAGAAACCAAAAGAACAAGAAACTGAGGAAGCCACAGAAGAAGACCTCTCAAAGGTCAAAGAACAAGAACATGAACATGTTGAATAA 279 0.4014 MDKSQSKDLHIQGFISDAIHQRGVCSTKKQVERCRTDASMLIITYTSTHNHPSPDEIFSTAYLSQKPKEQETEEATEEDLSKVKEQEHEHVE 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc166g00012 92 Gene3D WRKY domain 14 55 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc166g00012 92 MobiDBLite consensus disorder prediction 67 92 - -
Stsc166g00012 92 SUPERFAMILY WRKY DNA-binding domain 25 54 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc166g00012 92 MobiDBLite consensus disorder prediction 47 66 - -
Stsc166g00012 92 ProSiteProfiles WRKY domain profile. 25 54 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc166g00012 92 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 25 87 IPR044810 GO:0003700
Stsc166g00012 92 Pfam WRKY DNA -binding domain 24 52 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc166g00012 92 MobiDBLite consensus disorder prediction 47 92 - -
Stsc166g00012 92 SMART WRKY_cls 6 53 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc166g00012 Stsc-Chr166 62421 64569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc166g00012 25 54 WRKY Transcription Factor Family AT2G34830 73.333 1.77e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc166g00012 WRKY 1.1e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc166g00012 - - adu:107492378 95.1301