Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc166g00011 ATGAAGAACAACAACACATATGAAATGGAAGAAGAAGAATCTACGGAAGAATCTATGGAAGAGGAATATCCGGAAGAAGAAGAATCTATGGAAGAGGAGGAGGAAGAAGAAGAACCTCTTGAAGAAGAAGAGGAATATCCGGAAGAAGAAGAAGAATCTATGGAAGAGGAGGAAGAAGAAGAAGAACCTCTTGAAGAAGAAGAGGAGGAGGAGGAAGAAGAACCTCTTGAAGAAGAAGAAGAATTTCTCGAAGAAGAAGAACCTCTGGAAGAAGAAGAGGAAGAAAAAGAGGAGGAGGAAGACTTCACTGATGATGAACCAGAGATCAAACAACTCAGTGAATGCACCACCCCACTAAGAAGCTGTTTCACTACTTTGACGGAGTCAGACATCAAGAAGCTCCAAGAAACTGAAATAAGCCGCGTATCATCTGTTCTTTTGGTACCCAAATCAGATGCTTGCTTTTTACTAATCCACCATGGTTGGAGTGCCATGAACGTCCGCAAGGCTTGGGTCCAGGATGAAGAAAGAGTTCGGAAACTTATTGGCATGCTCAAGAACAACTCCCAAGAAATCATAATAACCCAATCTTGTGAGATATGTTTTGATGAGAAGAAAATGAAATCCGCCGCCAAGTGTGGCCATGCATACTGCGTCGCTTGTTGGAAGCACTGCATCGATGAGAAGATCCAAGAAGGTCCTCATGAGTGCCTCAAACCCATGACTCCATGA 732 0.4303 MKNNNTYEMEEEESTEESMEEEYPEEEESMEEEEEEEEPLEEEEEYPEEEEESMEEEEEEEEPLEEEEEEEEEEPLEEEEEFLEEEEPLEEEEEEKEEEEDFTDDEPEIKQLSECTTPLRSCFTTLTESDIKKLQETEISRVSSVLLVPKSDACFLLIHHGWSAMNVRKAWVQDEERVRKLIGMLKNNSQEIIITQSCEICFDEKKMKSAAKCGHAYCVACWKHCIDEKIQEGPHECLKPMTP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc166g00011 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 243 IPR013083 -
Stsc166g00011 243 MobiDBLite consensus disorder prediction 10 107 - -
Stsc166g00011 243 Pfam Zinc finger, C3HC4 type (RING finger) 198 229 IPR018957 GO:0046872
Stsc166g00011 243 SUPERFAMILY RING/U-box 197 237 - -
Stsc166g00011 243 MobiDBLite consensus disorder prediction 1 115 - -
Stsc166g00011 243 Coils Coil 9 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc166g00011 Stsc-Chr166 52406 53137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc166g00011 123 243 C3H Transcription Factor Family AT2G31760 37.500 6.23e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc166g00011 K11968 - aip:107632220 189.119