Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1659g00002 AAACCTCCTTCAATCCCATCCTTCGTCGAGCCCGTCGTCACTCTCCATCCTCCTTTGAGCCTGTCACTCCCCATCATTCGTCGCGCCAGAGACCTCCTTCAATCCCATCCTCCGCCGCGACATCTCCACCACAGTCGGCGCTCCCTCCGCCGCCGTTCGTTGTTCACAAATCTTCGATGTGCACCTTCCGTCGCCGCACCCTCCGTCGTCGCACCGCCCGTCGCGCCAGAGACCACCGTCAACCCCTCATCTCTCACTAACTCCTTCGATCTTCGATTTGCACTCGAAAGGGAAAGAAGAAAGAACGCTTCGTCGCCTCTCCCTCCGTCAACCCTAACCTCCATGGCAGCTCCCTCCGTCAACTCCAACCTCCGTCGCGGCTCCTTCTGTCAACCCCACCTCCATCGCGTCCTCTTCTCCTCCATAGGTGCTCCTTCCGCCGCTGCTTCGTGTTCATTAATCTTCACCGCTGTTGCCGCTCCTTCTGTCGCCCTCCTTTCGTCGCGCTTCCATCGTTGCTCCAATCTGCATAAACCCTCGTTCCCTTTTCTGTCAATCGTTGTTCCAATCGGCGTCTACGCTCACTTTCCTATCAACGCCAGCATCTCCAATAACAACGCCTCCATCGAGATCCGTAACTTCCTTGGTGAGAAGAAGGTCAGGAAAGTGGACATGCTTGAGGGATTTTCTGTTGTTAGATCTGAGAAGGTTAAGGATGAACTCATTTTGGATGGAAATGACATTGAGCTTGTGTCTCTGTCCTGCGCTCTGATTAACCAGGTGATATAG 789 0.545 KPPSIPSFVEPVVTLHPPLSLSLPIIRRARDLLQSHPPPRHLHHSRRSLRRRSLFTNLRCAPSVAAPSVVAPPVAPETTVNPSSLTNSFDLRFALERERRKNASSPLPPSTLTSMAAPSVNSNLRRGSFCQPHLHRVLFSSIGAPSAAASCSLIFTAVAAPSVALLSSRFHRCSNLHKPSFPFLSIVVPIGVYAHFPINASISNNNASIEIRNFLGEKKVRKVDMLEGFSVVRSEKVKDELILDGNDIELVSLSCALINQVI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1659g00002 262 SUPERFAMILY Ribosomal protein L6 192 260 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc1659g00002 262 Gene3D - 190 262 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc1659g00002 262 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 192 260 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc1659g00002 262 Pfam Ribosomal protein L6 196 261 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1659g00002 Stsc-Chr1659 9891 11547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1659g00002 192 260 Cytoplasmic Ribosomal Protein Gene Family AT4G10450 84.058 2.95e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1659g00002 K02940 - han:110884280 116.701