Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1649g00002 ATGACGAAGGACCTTGAGGTTACCGAGAGAGGCTCTTTCTCCGGCAAGGACTACCATGACCCCCCTCCGGCGCCCCTCATCGACGCCGAGGAGCTCACCAAGTGGTCCTTCTACAGAGCTCTCATTGCTGAGTTCATAGCCACCCTCCTCTTCCTCTACATCACCGTCCTCACCGTCATCGGCTACAAGAGCCAGAGCGACACCAAAGCCGGCGGCGATATCTGCGGCGGTGTTGGCATCCTCGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGAATCTCAGGAGGACACATAAATCCAGCAGTGACATTCGGGTTGTTCTTGGCGCGGAAGGTGTCTTTGATAAGAGCAATATTGTATATGGTGGCTCAGTGCTTGGGTGCTATCTGCGGTGTTGGCTTGGTCAAGGCCTTCCAGACCTCCCTCTACGTCAGGTACGGCGGCGGTGCCAACTCACTCGCCGACGGTTACAGCAAGGGCACCGGTTTGGGTGCTGAGATCATTGGTACCTTTGTTTTGGTCTACACTGTCTTCTCCGCCACCGATCCCAAGAGGAATGCCAGAGACTCTCATGTCCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACAGGCACTGGCATCAACCCTGCTAGGAGTCTTGGTGCTGCTGTTATCTACAACAAAGACAAGCCATGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGGGCAGCCATTGCAGCTTTCTACCATCAATTCATCTTGAGGGCAGGTGCAGTCAAGGCTCTTGGATCATTCAGGAGCAACCCCAATGTCTGA 864 0.5417 MTKDLEVTERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDTKAGGDICGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQTSLYVRYGGGANSLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1649g00002 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Stsc1649g00002 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Stsc1649g00002 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1649g00002 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 276 IPR034294 -
Stsc1649g00002 287 MobiDBLite consensus disorder prediction 1 22 - -
Stsc1649g00002 287 MobiDBLite consensus disorder prediction 1 16 - -
Stsc1649g00002 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Stsc1649g00002 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1649g00002 Stsc-Chr1649 7684 10743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1649g00002 1 287 Major Intrinsic Protein MIP AT2G37170 86.411 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1649g00002 K09872 - gmx:100817292 535.798