Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1638g00001 ATGAAGGAGCTTGTAGGTATTGAATCAAGAGTGGAGCAAGTGATTAGCCAGATAGACCTTGGTTTAAATGATGTTCGTTATATAGGCATATGGGGAATGGGCGGCATAGGTAAGACCACTATTGCTAGAGCAGTCTTTGAAGCCATTCGAGATAGATTTGAAGTTACCTGCTTTCTTGCTGATGTAAGGGAGCAATGTGAGAAAAAACTAATCCACATACAAAAACAACTTCTTGATCAAATGCATATTAGTTCGACTGCTGTCCATACCGAGTATGATGGGAGAACAATAATTCAAACATCTTTACGTCTCAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATCATGAAAAGCAATTAGAGAATTTGGCTGGAAAGAAGGATTGGTTTGGTTCTGGAAGCAGAATAATAATTACAACTAGAGACACACACGTGCTAAAAGAGCCAAAGATGCATGAAACTTATAAGGTTGAAGGTTTAGTGGAAAGTGAAGCCTTTAAACTCTTTTCTTTAAAAGCTTTTAAACTGCCAAATCCTACGGAGGAGTTTTTAGATTTGTCCAGAGAAGTGGTCAAATATGGTGGTGGTCTTCCTTTGGCCCTTAAAGTATTGGGACGTGGGAAGGATTATGCAACAAAGATATTAGAAGCATGCAGTCATCATGCTGAAATCGGTATTGATGTTTTGATTAATAGATCATTGGTCACAATAGAGCAAGATCGTCATGGGAAGGACATTCTAGGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTAATTCAAGAATCTCTTAATGATGCCAGCAAGCGTAGCAGATTGTGGTGTTTCGAAGATGTTGATTCTGTACTTACTCAAAAGAAGGAAACTGAAGCCACTCATAGCATCGTTCTGCACAAGATGGAGATCTTTAACACTGCAGTGCGTTGGAAGGATTTAGCATTCTCAAATATACGCCAGCTAAAGGTCCTCATTTTAGGTGCCGTGAAAGCTCCCATTCTCAGCAATATTCCTTGTTCATTAAGAGTTTTGCTTTGGACATGTTGTCCATTGGAAACTCTGCCCCTCACAGATCAACACTATCAACTTGTTGAAATTGATCTGTCTCACAGCAAAATTGTACGATTATGGGATGGAACTAAGTTTCTAGAAAATTTAAAGCACCTGGATCTGTCATTTTGCACCAATCTGAAGAAAACACCAGACGTTTCTGGGGCTCCCAATCTCAAAACTCTTAATCTTGAGCAATGTGATGAGCTGGATTATATTCACCCTTCTTTGGCACACCACAAAGGCCTTGTTGAATTGAATTTAAGGGAATGTAGCAGTCTTGAAATACTTGCAGATAAATTGGAGATGACTTCCCTGGAGAAACTAGATCTACACGGTTGCACTAGGTTGCAAAAACTGCCAGAATTTGGAGAATGCATGAGAAAGTTATCTATTCTTTGTTTGGGTGGTACAGACATAAAAGAGCTACCCAAGACATCCAAAAATTTGGTTGGCCTTTCTGAGTTGGACTTAAGTTTGTGGGGATATACTGATCTTCCCCTATCACTTGGGAGTTTCGTTGGCCTCAAGAAGTTGAAGTTGGGTGGATGTCGCATGCTTTATCTTCCATACTCCATTCATGGGTTAGAGTCCCTTAAAGTTTCGGATTGTTCTGACATTCCAAACATCCATGAATGCTTTAGCAGCTTAGCTTCGTTGACAGATTTGGATATGTCGTTTAACAGCTTTGTAAAGGTTCCAATAAGTAGCCATGAACTTCCCAGGCTTACACGTCTTAAGCTAAACCGTTGCAAAAATCTTCAAGTTTTGCCGGAGCTCCCATCAAGACTAAGAGAATTACAAGCATCAAATTGCAAATCATTGCATTTATCCAAAGACTCAAATGCCATATCAAAGGCATGTTGTGTCTTTGCAGAATCAGCTACCCAAGATGGTGAAGAAGAAGGCTTGTTGCAAATGTTGATCTCAGGGAAAGAAATTCCAGCATGGTTTGTCCATCAGAGAGAAAAGGGCACTATATTAGTGCCGTTACTGCGCAGTTGTCCTTCAACTGAAATCATGGCACTTGCTCTCTGTTTCATGCTAGAAAGTGATACCCACTATGACATACAACCTAAGGTGACCAGCAACGGGAAAGAATTCATCAGCAAGAGCTTATTTCAGATGAAGTTGGATAAACATTCTCAGCATTTGTTCATCGTCTGCTTGACTGGTAACCATATTAGTAACCTGTTAGGCCAATACAATCACTTCAGTATGGTAATTCCTTCCAGTTATGTTGCTGGTACTGTCAAAGTAAAGAGATCTGGAGCACGTTGGGTGTGTAAGAAAGACATTCAAGATTTCAAGAAATGA 2370 0.3979 MKELVGIESRVEQVISQIDLGLNDVRYIGIWGMGGIGKTTIARAVFEAIRDRFEVTCFLADVREQCEKKLIHIQKQLLDQMHISSTAVHTEYDGRTIIQTSLRLKKVLLVLDDVNHEKQLENLAGKKDWFGSGSRIIITTRDTHVLKEPKMHETYKVEGLVESEAFKLFSLKAFKLPNPTEEFLDLSREVVKYGGGLPLALKVLGRGKDYATKILEACSHHAEIGIDVLINRSLVTIEQDRHGKDILGMHDLLEEMGKQIVIQESLNDASKRSRLWCFEDVDSVLTQKKETEATHSIVLHKMEIFNTAVRWKDLAFSNIRQLKVLILGAVKAPILSNIPCSLRVLLWTCCPLETLPLTDQHYQLVEIDLSHSKIVRLWDGTKFLENLKHLDLSFCTNLKKTPDVSGAPNLKTLNLEQCDELDYIHPSLAHHKGLVELNLRECSSLEILADKLEMTSLEKLDLHGCTRLQKLPEFGECMRKLSILCLGGTDIKELPKTSKNLVGLSELDLSLWGYTDLPLSLGSFVGLKKLKLGGCRMLYLPYSIHGLESLKVSDCSDIPNIHECFSSLASLTDLDMSFNSFVKVPISSHELPRLTRLKLNRCKNLQVLPELPSRLRELQASNCKSLHLSKDSNAISKACCVFAESATQDGEEEGLLQMLISGKEIPAWFVHQREKGTILVPLLRSCPSTEIMALALCFMLESDTHYDIQPKVTSNGKEFISKSLFQMKLDKHSQHLFIVCLTGNHISNLLGQYNHFSMVIPSSYVAGTVKVKRSGARWVCKKDIQDFKK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1638g00001 789 PRINTS Disease resistance protein signature 101 115 - -
Stsc1638g00001 789 PRINTS Disease resistance protein signature 382 398 - -
Stsc1638g00001 789 PRINTS Disease resistance protein signature 194 208 - -
Stsc1638g00001 789 PRINTS Disease resistance protein signature 27 42 - -
Stsc1638g00001 789 SUPERFAMILY L domain-like 305 628 - -
Stsc1638g00001 789 Gene3D Ribonuclease Inhibitor 299 453 IPR032675 -
Stsc1638g00001 789 Pfam C-JID domain 661 783 IPR045344 -
Stsc1638g00001 789 Gene3D - 1 156 IPR027417 -
Stsc1638g00001 789 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 473 IPR044974 GO:0006952
Stsc1638g00001 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 206 IPR027417 -
Stsc1638g00001 789 Gene3D Ribonuclease Inhibitor 454 638 IPR032675 -
Stsc1638g00001 789 Gene3D - 160 207 IPR042197 -
Stsc1638g00001 789 Pfam NB-ARC domain 8 209 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1638g00001 Stsc-Chr1638 1722 4467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1638g00001 4 608 WRKY Transcription Factor Family AT4G12020 29.542 6.76e-66 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1638g00001 - - adu:107485884 833.172