Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1637g00001 ATGATGGTAGAAGACACATTCTTTTTCCCGCCAGATTCAGATCTTGATCTTAGTTTCACAAGCACCACCACTGACCGTACATTCACCACCACCGCCTCCTCCTCCGCCCGCACCTCCCTTACACGCACCAGCAGTCTCACCCTCAGTTTCAGCTTCAACGACCGTCTCTCCACCGCATCCGCCTCCGCAACAACCTCATCTACCTCCGTCCTCCGTCGTCCCCACCGCAGCTCCGACCCACACTGGTCCGCAATCCGTGCTGCTACTGCCCTCTCCTCCGACGGCCGCCTTCACCTCCGCCATCTCAAGATCCTCCGCCACCTTGGCACCGGAAACCTCGGCCGCGTCTTCCTCTGCCGCCTCCGAGATGACCACCACGGCGGCGCCACCTTCGCCCTCAAGGTCGTCGATAAGGACCTCCTAACCGCCAAGAAACTCTCCCACGTGGNNNNNNNNNNGGACCACCCTTTCCTCCCCACGCTCTACGCACGCATCGATGCTTCTCACTACACGTGCCTCCTCATCGACTACTGCCCCAACGGTGACCTCCATTCCCTCCTACGCAAACAGCCCGGTAACCGGCTCCCGATCCGGGCCGTTCGATTCTTCGCGGCGGAGGTACTTGTCGCGCTCGAATACCTCCACGCGCTTGGAATCGTTTACAGAGATCTCAAACCAGAGAATGTTCTGTTACGCGAGGATGGCCACGTCATGCTCTCGGATTTCGATCTCTGCTTCAAAGCTGACGTGGCGCCAGTTTTCGAGCGTAGGGCACACTCCCCGAGACTAACAACAAACTCGAGAAACCGTTGTTTCTGTTATAACAACCGTAACAAATCTCGATTCACGGAGCGCGTGGTGGCGGAGTTTGTTGCGGAACCAACCACGGCGTTTTCACGATCGTGTGTTGGGACCCACGAGTATCTCGCTCCGGAGCTTGTTTCTGGTAACGGTCACGGTAACGGCGTGGATTGGTGGGCTTTTGGGATTTTCATGTACGAGCTTTTGTATGGTACGACGCCGTTTAAGGGGCGTAGTAAAGAGAGCACGCTGCGCAATATAGCATCGAGCAGGGACGTGAGATTTTACGTTAATGAGAGAGAGGAATTGGAGGAAGGGATAAGCGAAGCTAGGGATTTGATTGAGAAGCTTTTGGTGAAGGATCCAAGGAGGAGGCTAGGGTGCGCCAGGGGTGCAACGGATATTAAACGGCACCCGTTTTTTGCTGGGATCAAGTGGCCGTTGATTCGGACGTATAAGGCACCGGAGGTTAGGGGGTTGGTGAAGAGGAGTAGGTCGTTACAGCACGTGACTAGTCACGTGACACATTGTAGGAGGAGAAAGTGGTGGTGGAAAGCGCTTGAGTATGTGATGAGGAAGAAGGGGAACAAATATAATAACTCGATCACAAACTATAGTAATGGGAATTATTATCATTATGTTAATAGTTATAAGGTTAGGTAA 1464 0.5362 MMVEDTFFFPPDSDLDLSFTSTTTDRTFTTTASSSARTSLTRTSSLTLSFSFNDRLSTASASATTSSTSVLRRPHRSSDPHWSAIRAATALSSDGRLHLRHLKILRHLGTGNLGRVFLCRLRDDHHGGATFALKVVDKDLLTAKKLSHVXXXXDHPFLPTLYARIDASHYTCLLIDYCPNGDLHSLLRKQPGNRLPIRAVRFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKADVAPVFERRAHSPRLTTNSRNRCFCYNNRNKSRFTERVVAEFVAEPTTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGIFMYELLYGTTPFKGRSKESTLRNIASSRDVRFYVNEREELEEGISEARDLIEKLLVKDPRRRLGCARGATDIKRHPFFAGIKWPLIRTYKAPEVRGLVKRSRSLQHVTSHVTHCRRRKWWWKALEYVMRKKGNKYNNSITNYSNGNYYHYVNSYKVR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1637g00001 487 PANTHER FLIPPASE KINASE 1-RELATED 35 426 - -
Stsc1637g00001 487 Gene3D Transferase(Phosphotransferase) domain 1 300 427 - -
Stsc1637g00001 487 CDD STKc_phototropin_like 100 424 - -
Stsc1637g00001 487 FunFam Serine/threonine-protein kinase WAG2 182 248 - -
Stsc1637g00001 487 ProSiteProfiles Protein kinase domain profile. 102 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1637g00001 487 Gene3D Phosphorylase Kinase; domain 1 101 181 - -
Stsc1637g00001 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc1637g00001 487 Gene3D Transferase(Phosphotransferase) domain 1 182 248 - -
Stsc1637g00001 487 Pfam Protein kinase domain 299 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1637g00001 487 Pfam Protein kinase domain 104 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1637g00001 487 SUPERFAMILY Protein kinase-like (PK-like) 81 434 IPR011009 -
Stsc1637g00001 487 SMART serkin_6 102 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1637g00001 487 FunFam Serine/threonine-protein kinase OXI1 297 426 - -
Stsc1637g00001 487 Gene3D Phosphorylase Kinase; domain 1 428 440 - -
Stsc1637g00001 487 Coils Coil 360 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1637g00001 Stsc-Chr1637 7012 8967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1637g00001 2 487 AGC Kinase Gene Family AT3G14370 65.538 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc1637g00001 Pkinase 7.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1637g00001 - - lja:Lj0g3v0200189.1 637.876