Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc162g00008 ATGATTCCGGGACGAATCGGCGACTTGAGAAGCCTAACTCTGTTCTTTGCTTGGCAGAACAAGCTAACTGGAAAACTCCCAGATAGTCTTTCTGAGTGCCAAGAACTTGAGGCACTTGATCTTTCATACAACAATTTGATCGGTCCAATACCAAACCAGCTATTCGGATTGAAAAATCTCACCAAACTCTTGCTTCTTGGCAATGATTTATCCGGCATTATCCCGCCGGATATAGGTAACTGCACTAGTCTATACCGGCTCCGGTTGAATCACAATAGACTAGCAGGTAACATCCCACAAGAGATTGGAAACTTAAAGAATCTGAATTTCTTGGATTTGAGCAATAACCATCTCAGTGGGGACTTTCCTCAAACATTTGGCGGGTGCCAGAATCTTGAGTTCTTGGATCTCCATTCAAACAGCATCACAGGTTCTGTTCCTGATTCTCTTCCCAAAAGCCTTCAATTAATTGACATATCAGACAACATGCTTTCAGGATCACTGACTCATTCCATTGGTTCGCTGAATGAATTAACAAAACTCTACCTTGGAAAGAACCAAATCAATGGAAGAGTCCCTTCAGGGATTCTTTCTTGTTCCAAGCTACAACTTCTTGATCTGGGAAGCAACAGTTTCTCAGGGGAGATCCCAAAAGAACTCGGCCTACTTTCATCACTTGAAATCTCGCTGAACCTCAGCCATAACCAATTCTCCGGCAAGATTCCTTCCGAGTTTTCGAGCCTCGGAAAGCTAGGAGTCCTTGATCTCTCCCACAACAAACTCACAGGGAACTTAGACGCTCTTTCTAGCCTCCAAAACCTTGTTTCCTTGAATGTCTCCTTCAATGGCTTCTCTGGTGAATTACCAAACACACCATTCTTCCAAAAGCTCCCTCTAAGTGATCTCGCCGAAAATCAAGGTCTCTATATTACCACTATAAACTCTTCTGACAAAACACAGTCAGCGAGTCACAAGTCAGTTATGAAGTTAGTTATGTCAATTCTCCTAAGCACTAGCGTAGCACTAGTGCTGCTAACGGTCTACGTCCTGATTCGTTCGCACATAGCGAACGAATCTCGGGCACAGGCCGATAGCTGGGAGATGACATTATATCAAAAGTTTGATCTATCCATTGACGAAATTGTCATTAATTTGACGTCCTCCAACGTGATCGGAACCGGAAGCTCCGGCGTGGTGTACAAGGTAAGTATCCCAAACGGCGAAATACTAGCCGTTAAGAAGATGTGGTTGTCAACGTCATCAGAAGAATCTAGAGCATTCGATAACGAGATTCGAACGCTTGGTTCGATTAGGCACAAGAACATCATAAGGCTTCTTGGTTGGGGATCCAACAGGAACTTGAAGCTTCTATTCTATGATTATCTCCCTAATGGAAGCTTGAGTTCATTGCTTCATGGTTCAGGGAAGGGAAAAGCTGAATGGGAAACGAGATACGATGTTATTTTGGGTGTGGCTCATGCACTTTCGTATATGCACCATGATTGTGTTCCTTCTATAATCCATGGAGATGTTAAGGCCATGAATGTGTTGTTAGGACCTGGATTTCAACCTTACCTTGCTGATTTTGGTCTTGCAAGAATTGCTGATGGTGGTGGTGGTGGTGATGACACTGAAAATTCTATGCAAGTTCAAACGCACTACCTTGCTGGTTCATATGGATACATGGCTCCTGAGCATGCATCAATGCAACCCATAACTGAGAAGAGTGATGTATACAGTTATGGTATAGTTGTACTTGAGGTTCTAACAGGAAGACACCCATTAGACCCAACTCTACCAATGGGTGCACCCTTGGTCCAATGGGTTAGGAACCACTTAGCCAACAATGGTGACCCATCAGACATCCTTGACTCAAAGCTCAAAGGCAGATCTGACCCTACCATGCATGAGATGCTACAAACTCTGGCTGTCTCATTTCTTTGTGTTAGCACAAAAGCTTCTGATAGGCCAACTATGAAGGATGTTGTTGCAATGTTGAAGGAAATTAGGCCTATTGAGTCTTCAAGGGTTGACCATGATGTGCTCAAGAAAGGAGGTTTGACCTCATCATCACATAGTTCTTCAACCACAATTAAACCATCACCACCTCCTAGGAATGCTGTTGTTTCTCATGGATCTTCTAATTGTTCCTATGATTTCTCTGATGAGTCAAACAGTTAA 2181 0.4333 MIPGRIGDLRSLTLFFAWQNKLTGKLPDSLSECQELEALDLSYNNLIGPIPNQLFGLKNLTKLLLLGNDLSGIIPPDIGNCTSLYRLRLNHNRLAGNIPQEIGNLKNLNFLDLSNNHLSGDFPQTFGGCQNLEFLDLHSNSITGSVPDSLPKSLQLIDISDNMLSGSLTHSIGSLNELTKLYLGKNQINGRVPSGILSCSKLQLLDLGSNSFSGEIPKELGLLSSLEISLNLSHNQFSGKIPSEFSSLGKLGVLDLSHNKLTGNLDALSSLQNLVSLNVSFNGFSGELPNTPFFQKLPLSDLAENQGLYITTINSSDKTQSASHKSVMKLVMSILLSTSVALVLLTVYVLIRSHIANESRAQADSWEMTLYQKFDLSIDEIVINLTSSNVIGTGSSGVVYKVSIPNGEILAVKKMWLSTSSEESRAFDNEIRTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALSYMHHDCVPSIIHGDVKAMNVLLGPGFQPYLADFGLARIADGGGGGDDTENSMQVQTHYLAGSYGYMAPEHASMQPITEKSDVYSYGIVVLEVLTGRHPLDPTLPMGAPLVQWVRNHLANNGDPSDILDSKLKGRSDPTMHEMLQTLAVSFLCVSTKASDRPTMKDVVAMLKEIRPIESSRVDHDVLKKGGLTSSSHSSSTTIKPSPPPRNAVVSHGSSNCSYDFSDESNS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc162g00008 726 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 153 228 - -
Stsc162g00008 726 FunFam Putative LRR receptor-like serine/threonine-protein kinase 229 314 - -
Stsc162g00008 726 PRINTS Leucine-rich repeat signature 108 121 - -
Stsc162g00008 726 PRINTS Leucine-rich repeat signature 248 261 - -
Stsc162g00008 726 Pfam Protein kinase domain 388 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc162g00008 726 MobiDBLite consensus disorder prediction 686 726 - -
Stsc162g00008 726 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 152 - -
Stsc162g00008 726 Gene3D Ribonuclease Inhibitor 73 320 IPR032675 -
Stsc162g00008 726 MobiDBLite consensus disorder prediction 677 726 - -
Stsc162g00008 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Stsc162g00008 726 SUPERFAMILY Protein kinase-like (PK-like) 384 666 IPR011009 -
Stsc162g00008 726 ProSiteProfiles Leucine-rich repeat profile. 250 272 IPR001611 GO:0005515
Stsc162g00008 726 FunFam Putative LRR receptor-like serine/threonine-protein kinase 370 461 - -
Stsc162g00008 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 91 670 - -
Stsc162g00008 726 ProSiteProfiles Protein kinase domain profile. 385 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc162g00008 726 SMART LRR_typ_2 175 199 IPR003591 -
Stsc162g00008 726 SMART LRR_typ_2 105 128 IPR003591 -
Stsc162g00008 726 SMART LRR_typ_2 57 81 IPR003591 -
Stsc162g00008 726 SMART LRR_typ_2 248 271 IPR003591 -
Stsc162g00008 726 SMART LRR_typ_2 223 247 IPR003591 -
Stsc162g00008 726 Gene3D Phosphorylase Kinase; domain 1 350 461 - -
Stsc162g00008 726 Gene3D Ribonuclease Inhibitor 1 72 IPR032675 -
Stsc162g00008 726 SMART serkin_6 385 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc162g00008 726 SUPERFAMILY RNI-like 2 290 - -
Stsc162g00008 726 ProSitePatterns Protein kinases ATP-binding region signature. 391 414 IPR017441 GO:0005524
Stsc162g00008 726 Gene3D Transferase(Phosphotransferase) domain 1 462 685 - -
Stsc162g00008 726 Pfam Leucine rich repeat 83 142 IPR001611 GO:0005515
Stsc162g00008 726 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 462 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc162g00008 Stsc-Chr162 59128 63613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc162g00008 2 724 Receptor kinase-like Gene Family AT5G56040 66.069 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc162g00008 Pkinase 3.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc162g00008 - - psat:127084696 1061.6