Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc162g00007 ATGCCACAAGAGAGCTTCCATAATCCATTTTTCACTTCTCCTTCAAAGAGAGGATTAAAGGGTTTGGTTCCTATCAACAACAACAACAAAAATAATGATAATGAAGCTTCTTCAAAGAAAGCCATAGCAATGGTAGAAGAGAGTTTCAACGATCATGAATTGGCTCAAAGAAAGGCAGAGGAAGCAGCTTCAAGGAGATACCAAGCATCAGAATGGGTTAGAGAAATGGATGAAGCAGCAAAAGCATTCCTCCCAAAAGAACCTTCAGAAGAAGAATTCCGAAATGCACTACGCAATGGCCTCATTCTTTGCAATGTCCTCAACAAGGTCCATCCCGGTGCTGTTTACAAAGTGGTGGAGAATGGTGGGGTTGCGGCGGTTGCAAGTGCAGAGGGAGCAGCACACTCTGCAATTCAATATTTTGAGAACGTCAGAAACTTTTTGGAGGCTGTCAAGGATTTGCAGCTTCTCACTTTTGAAGCTTCTGATCTCGAGAAGGGTGGTTCATCAAACAAAGTTGTAGACTGCATTCTATGCTTAAAAGGGTACTATGAATGGAAGTTATCTGGTGGAGAAGGAGTATGGAAGTATGGTGGGACTGTGAGGATCACCTCACTTCCAAAGAGGCCTTCTCCTTCTTCTTCATTATCATCCACAATTGGAAGTGATGATCAATCATTATTGTTATTGGATGAGCAAGAGGCTTCACAATATGAACAACTCTTAGAATTTCTCCAACTTTCTCAAGAGTTCTTGATTCAAGAATCTAGAACTGCAAACACTCTCTCCTTCCTTTTTGATCACTTTGGACTCAGGCTTCTTCAGGCATACCTTAGAGAATCTGATCACATTCAAGATCTCCCTTTGAATGCAATGGTAATTGATACACTGCTTAACAAGGTAGTCAAGGATTTCTCATCCTTGCTTGCTTCCCAAGGCACTCAGCTTGGACTTTTCCTGAAGAAGATATTGAAAGGTGATGATATTGGATGTCTATCAAAGAGAGAGTTCATAGAAGCTATCTCACTATATCTTAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAGTTCTGCATTTGTGGTGGTAGACGTGAAAATACTCACCATAAAAATAATAATAATAATAATAATAATAGTGCCAACAATTATTCCTCCAAGCATATTGAAGTAATCAATAACCAACAGAAGCAACTTGAGGAAATGAAATACCTTTTTCAAGAGACAAAAATGGAGGTCAAACAAATTCAGTCAGAATGGGAGCAAGAAAGTTGTAGGCTAGAGGAACATATCAAGAGTCTTGAAGTGGCCTCCTTTTCCTATCACAAAGTTTTGGAGGAGAATCGTAATCTTTATAATCAAATACAAGACCTCAAAGGAACCATTAGGGTGTATTGTAGAGTGAGGCCATTCCTAGGAGGACAATCAAATGGAGAGTGTACGGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTGAACCCCCTTAAGCAAGGCAAAGATTCTAGAAGGGTATTTTCATTCAATAAAGTATTTGGAACAACCGTAACACAAGAACAAATATATGCTGACACTCAACCACTTGTGAGGTCTGTTTTAGATGGTTACAATGTCTGCATTTTTGCATATGGACAGACCGGCTCAGGAAAGACCTACACAATGAGTGGTCCTGATCTGACAAATGAAGAGACATGGGGTGTAAACTATAGGGCTCTGCGTGACTTATTTCATATAACCAAGGAAAGGACAAATTCCATCAAATATGAAGTCTATGTTCAGATGATTGAGATTTACAATGAACAAGTCAGAGACTTTTGCTTAACAAGATTCACATTAGATATAAGAAACAACTCTCAACTGAATGGTTTAAATGTTCCTGATGCATTCATAGTTCCAGTCACTTGTACTCAAGATGTTCTTGATTTGATGAGAATCGGGCAGAGGAATCGCGCCGTAGGTGCTACAGCGCTAAATGTTCGAAGCAGCCGTTCTCACAGTGTTCTAACAGTTCATGTTAGAGGGGTGGAATTGGTTTCGAACTCGATTCTCCGAGGTTGTCTTCACCTAGTTGATCTGGCGGGAAGTGAGAGGGTTGATAAATCTGAAGCTGTTGGTGAAAGACTAAAAGAAGCTCAATATATAAATAGATCACTTTCAGCACTTGGAGATGTTATCTCTGCTCTTGCTCAGAAAAGTCCGCATATTCCTTACAGAAATAGCAAGCTCACACAAGTCTTACAAGATTCTTTAGGTGGGCATGCAAAAACTTTGATGTTTGTTCACATAAATCCTGAAGTTAATGCAATTGGGGAGACAATTAGCACACTCAAGTTTGCTGAAAGGGTTGCATCCATTTCACTTGGTGCTGCTCAAACTAACAAAGAAACTGGAGAGATTAGACAACTAAAGGAAGAGATTGCAAGTCTGAAATTGGCATTAGAAAAGAAGGAAACAGAAGTTGAACAATGGAAGAATGGGAATAACTCTAGAAATGCAATTGAAGGACAGAAAGGAAGAGCTATTTCACCATATCGCTTGCCCAAATATGGAAACAAGCCAGACTCTTGTCAGAGACCAACACCAACAGATGATAAAAGTTTTGAGGTGAGGAGCTGTTCTTCTGGTAAGCAAAGAAGGTCAAGGTTCCCCTCAGCATTGGATTCATCACCAATGTCAAAAATGTCTCTTATGAATGAAGAAAAAATGGAGAATTTTAATTCCCATAAAGGAAGATCTCCATCACCTCCAGTTATTAGAAGATCAAAATCCACAGAAAGAGGTTCATCAGTCATCAAAATCAAGGTCAAAATCGACACAGCAGATAACAACAACAACAGCAACAATAATAACAACCAAAACCAACCAATAATCAAGCATCCATTCCCATCAAGTAGGAAAGTTCATCAAGAGATTAATGAAGAAGACCAATTCAAGCAAGCACTAAGTGTAGTAAGGCAAGGTGGTATTCGAAAAATTACCAAGGTTGTTGATGGTAGTAATAATAATAATTATTATTATAATAAGGGTAAGGGTAAAAATAATAATAGTCAATTGTCACCCTTTAAGATTCATCATCAGAATCAAAAGCATGATATGTTGGTCCCTTCATTTGGTGAAATTGCTCTGGAGTCACCAAGAACAAGTGATTATTCAGATCAGTCAGAAAATAGTCTTGGCTTTACTGAATCAATTGGAGATTGTGCTGCTTTGAATGTTACCACCAAGATGCTTGATAACTTTCCAAGGAGTTCTCAAAACCTTTTTGCTTCAAGAGGAATGGTGCAAGGAGGTGAAGCATTATTATCAGGTAGCAGAGTTGAGAACAAAGTTTTGAATGGTTCAGGTAGTAATACTAAAGAATCAAGTAAGACACCCATGCCTGAATTTCGAAGGAGCAGATCTACCCCACGTGGAAAGTTTCTTAGTTTATCATGA 3441 0.3877 MPQESFHNPFFTSPSKRGLKGLVPINNNNKNNDNEASSKKAIAMVEESFNDHELAQRKAEEAASRRYQASEWVREMDEAAKAFLPKEPSEEEFRNALRNGLILCNVLNKVHPGAVYKVVENGGVAAVASAEGAAHSAIQYFENVRNFLEAVKDLQLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGEGVWKYGGTVRITSLPKRPSPSSSLSSTIGSDDQSLLLLDEQEASQYEQLLEFLQLSQEFLIQESRTANTLSFLFDHFGLRLLQAYLRESDHIQDLPLNAMVIDTLLNKVVKDFSSLLASQGTQLGLFLKKILKGDDIGCLSKREFIEAISLYLNQRSSLASNDFSKFCICGGRRENTHHKNNNNNNNNSANNYSSKHIEVINNQQKQLEEMKYLFQETKMEVKQIQSEWEQESCRLEEHIKSLEVASFSYHKVLEENRNLYNQIQDLKGTIRVYCRVRPFLGGQSNGECTVDYIGENGDMMIVNPLKQGKDSRRVFSFNKVFGTTVTQEQIYADTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTNEETWGVNYRALRDLFHITKERTNSIKYEVYVQMIEIYNEQVRDFCLTRFTLDIRNNSQLNGLNVPDAFIVPVTCTQDVLDLMRIGQRNRAVGATALNVRSSRSHSVLTVHVRGVELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQYINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEVNAIGETISTLKFAERVASISLGAAQTNKETGEIRQLKEEIASLKLALEKKETEVEQWKNGNNSRNAIEGQKGRAISPYRLPKYGNKPDSCQRPTPTDDKSFEVRSCSSGKQRRSRFPSALDSSPMSKMSLMNEEKMENFNSHKGRSPSPPVIRRSKSTERGSSVIKIKVKIDTADNNNNSNNNNNQNQPIIKHPFPSSRKVHQEINEEDQFKQALSVVRQGGIRKITKVVDGSNNNNYYYNKGKGKNNNSQLSPFKIHHQNQKHDMLVPSFGEIALESPRTSDYSDQSENSLGFTESIGDCAALNVTTKMLDNFPRSSQNLFASRGMVQGGEALLSGSRVENKVLNGSGSNTKESSKTPMPEFRRSRSTPRGKFLSLS 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc162g00007 1146 PRINTS Kinesin heavy chain signature 737 758 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 PRINTS Kinesin heavy chain signature 657 674 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 PRINTS Kinesin heavy chain signature 688 706 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 PRINTS Kinesin heavy chain signature 537 558 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 PANTHER KINESIN-LIKE PROTEIN KLP-3 70 965 IPR027640 GO:0003777|GO:0007018
Stsc162g00007 1146 Coils Coil 442 462 - -
Stsc162g00007 1146 Coils Coil 393 420 - -
Stsc162g00007 1146 SMART ch_5 65 183 IPR001715 GO:0005515
Stsc162g00007 1146 ProSiteProfiles Kinesin motor domain profile. 462 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 878 903 - -
Stsc162g00007 1146 CDD CH_AtKIN14-like 65 181 - -
Stsc162g00007 1146 Gene3D Kinesin motor domain 457 829 IPR036961 -
Stsc162g00007 1146 Pfam Kinesin motor domain 468 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 1 37 - -
Stsc162g00007 1146 Gene3D - 55 184 IPR036872 -
Stsc162g00007 1146 FunFam kinesin-like protein KIN-14F 55 185 - -
Stsc162g00007 1146 ProSiteProfiles Calponin homology (CH) domain profile. 63 185 IPR001715 GO:0005515
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 824 962 - -
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 940 961 - -
Stsc162g00007 1146 FunFam kinesin-like protein KIN-14F 457 828 - -
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 1109 1125 - -
Stsc162g00007 1146 Coils Coil 794 828 - -
Stsc162g00007 1146 Pfam Calponin homology (CH) domain 65 185 IPR001715 GO:0005515
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 22 37 - -
Stsc162g00007 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 824 IPR027417 -
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 860 877 - -
Stsc162g00007 1146 SUPERFAMILY Calponin-homology domain, CH-domain 57 210 IPR036872 -
Stsc162g00007 1146 SMART kinesin_4 460 795 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc162g00007 1146 MobiDBLite consensus disorder prediction 1107 1146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc162g00007 Stsc-Chr162 37861 50398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc162g00007 392 787 Calmodulin-binding Proteins AT5G65930 39.000 1.16e-75 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc162g00007 K10406 - gmx:100786466 1467.21