Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc162717g00001 ATGCTATCACCACAACTTGAGAATCAAGGACAAGAAGACGATGGCTTCTTGATTGCTCAAATGGCATGGTCAATTGTGGTTCCAATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCAAAAGACATTGTGGATCGCATTGGAACCAACAACCCTGAAGCACCATCAATGCTGGATCGTGTTCTTAGGCTTCTTGCAA 241 0.444 MLSPQLENQGQEDDGFLIAQMAWSIVVPMALKTTIELGVFDIIAKAGEGAKLSAKDIVDRIGTNNPEAPSMLDRVLRLLA 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc162717g00001 80 Gene3D - 2 80 IPR036388 -
Stsc162717g00001 80 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 19 80 IPR016461 GO:0008168
Stsc162717g00001 80 FunFam Caffeic acid 3-O-methyltransferase 2 80 - -
Stsc162717g00001 80 Pfam Dimerisation domain 29 80 IPR012967 GO:0046983
Stsc162717g00001 80 SUPERFAMILY "Winged helix" DNA-binding domain 12 80 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc162717g00001 Stsc-Chr162717 126 366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc162717g00001 9 79 Monolignol Biosynthesis Gene Families AT5G54160 47.222 4.26e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc162717g00001 K13066 - aip:107606823 120.168