LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc162706g00001	ATGCTTGAGGGAGTCTCTGTAGTTAGATCCGAGAAGGTGAAGGATGAACTCATTTTAGATGGAAATGACATTGAGCTTGTGTCTCGGTCCTGCGCCCTAATTAACCAGAAATGCCATGTGAAGAACAAGGATATTAGGAAGTTCCTTGACGGTATCTATGTCAGCGAGAAGGGAACAATTGTTGAAGAGTAG	192	0.4323	MLEGVSVVRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVEE	63

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc162706g00001	63	Pfam	Ribosomal protein L6	2	51	IPR020040	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843
	Stsc162706g00001	63	SUPERFAMILY	Ribosomal protein L6	2	57	IPR036789	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843
	Stsc162706g00001	63	PANTHER	60S/50S RIBOSOMAL PROTEIN L6/L9	1	61	IPR000702	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843
	Stsc162706g00001	63	ProSitePatterns	Ribosomal protein L6 signature 2.	36	57	IPR002359	GO:0003735\|GO:0005840\|GO:0006412
	Stsc162706g00001	63	Gene3D	-	1	63	IPR036789	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc162706g00001	Stsc-Chr162706	80	417	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc162706g00001	1	63	Cytoplasmic Ribosomal Protein Gene Family	AT1G33140	87.302	7.97e-35	114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc162706g00001	K02940		-	gmx:100811498	124.405