Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc161g00010 ATGGTGAACAAAAATGTGGTTCCCTTTGTGGGAATGGTGATGGTTGTTATGTCACAGAGTGGGGGAATGGTGATAAACAAAGCTGCCATGAGTGATGGAATGAATAAGTATGTCATGCTTCTCTATGCTTATCTCATCTCCACCTTCCTGCTTCTCCCCTTTCCAATCCTTCACTATTTCAGCAGATCTGATGAGCATACTCCTCCTCTCACGTTCTCCTCACTGTGGAGCTTCTTTTTGCTTGGCTTGATTGGATGCTCAGGGCAGATATTGAGTTATGTTGGGATAGAACTTAGCTCACCTACTCTTGCTTCTGCCATGCTTAACCTCATCCCTGCTTTCACTTTTATACTAGCTCTCATCTTCAGGATGGAAGAAGCATGTTGGGGAGATTCGAGGACTCAAGCTAAAGTGTTAGGCACCGCAGTGTCAATTGGAGGAGCATTTGTTGTGATATTCTTCAAGGGCCCAGCAATCTTGAGTAATACAAACTCCACACTCTCACTTCAATTTTCACAGCAAGTGAATTGGATCTTAGGAGGATTCTTCTGTGCTTGTGATTCTTTCCTAGGTGCCCTCTGGTACATTTATCAGACTTCACTTGCAAAGAAATACCCTGCATTAATGGTGATGACGTTCTTCCAGAGCTTATTCTCAACCTTGGAGTGTGGATTATTTGCCATGTTTGCAGTTAGAGATGCAGAGGCATGGTTGCTGAAGCATTATACGGGTTGGCTTGCCATGCTATATCAGGCAATAGGTGCAAACGTGATAAGATTCATCTTATTGACATGGTGCGTGAGAAGAGCAGGGCCTCTGTTTTGCTCCATGTTTAAGCCTGTGGGAATCATCTTCACCGTTTTCATGGGTTCAATCTTCTTGGGGGATCATTTTTACCTTGGAAGTTTGATTGGTGCGGTTTTAATCGTAGTAGGGTTTTATGTTGTGATGTGGGGAAAGGCTACCCAAGAGAACAAGGTTGAAGTTGACTACTTGGAATCTGCATCTTATAACAGTAACAATAATGCTCCGCTATTGCAAAGAACATTGATGTATACTGGTATTGGATATAGCTCACCTACTTTGGCTTCAGCTATGGTGGATCTCACTCCAGCTTTCACCTATATTGTTGCTCTCATTTCCCGGTTGGAAAAGCTTAACATGAAACTACGGAGTGGCAAGGCAAAAAGCATTGGCACTGTCTTCTCAATAGTAGGGGCATTGGTGGTGACCCTACACCAAGGCTTTCCATTAACAAGTGACGGTGGTGGTTCGCTGCATAACCTGTCGGATGAAGACTCGGATTGGGTGCTCGGAGGATTCCTTCTCTCAGCTGGTAGCTTTTGTCTTTCACTCGTCTTCATTGTCAAGACATGGATTATCAAGGATTACCCTGAAGAGTTAATGGTGGCAACAATTTCTTGTAGCTTTGTGATCATCCTTTCGAGTATAGTAGCTCTCATTGTCGATTCAAGTGCACAAACATGGTTGCTCAAACCTGATACAGAGTTGATAGCTATAGTATATTCAGGAATATTTGTTGTGTCATTGCGTAGCATTGTGCATATATGGGCATGTAGAAAGAGAGGGCCTGTGTATGTTGCTATGTTCAATCCTTTGGGGATGGTGATTTCACTTGCCATGGGGGTCACATTTCTTAAGGACACCCTTTATCTAGGAAGCATAATTGGAGCTGGTGTCATAGCTCTTGGGTTTTATGGCGTGATATGGGGGCAGGATCAAGAAGAAAAGATGGTGGATCAGAAAAGTTATGAAAGATGTGACTCTGTGTCATCATCTTCCTCTACAGTTCCTTTGTTGCAGAACAAGAGCATTCGTGTATAA 1845 0.4325 MVNKNVVPFVGMVMVVMSQSGGMVINKAAMSDGMNKYVMLLYAYLISTFLLLPFPILHYFSRSDEHTPPLTFSSLWSFFLLGLIGCSGQILSYVGIELSSPTLASAMLNLIPAFTFILALIFRMEEACWGDSRTQAKVLGTAVSIGGAFVVIFFKGPAILSNTNSTLSLQFSQQVNWILGGFFCACDSFLGALWYIYQTSLAKKYPALMVMTFFQSLFSTLECGLFAMFAVRDAEAWLLKHYTGWLAMLYQAIGANVIRFILLTWCVRRAGPLFCSMFKPVGIIFTVFMGSIFLGDHFYLGSLIGAVLIVVGFYVVMWGKATQENKVEVDYLESASYNSNNNAPLLQRTLMYTGIGYSSPTLASAMVDLTPAFTYIVALISRLEKLNMKLRSGKAKSIGTVFSIVGALVVTLHQGFPLTSDGGGSLHNLSDEDSDWVLGGFLLSAGSFCLSLVFIVKTWIIKDYPEELMVATISCSFVIILSSIVALIVDSSAQTWLLKPDTELIAIVYSGIFVVSLRSIVHIWACRKRGPVYVAMFNPLGMVISLAMGVTFLKDTLYLGSIIGAGVIALGFYGVIWGQDQEEKMVDQKSYERCDSVSSSSSTVPLLQNKSIRV 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc161g00010 614 SUPERFAMILY Multidrug resistance efflux transporter EmrE 493 580 - -
Stsc161g00010 614 Pfam EamA-like transporter family 439 576 IPR000620 GO:0016020
Stsc161g00010 614 Pfam EamA-like transporter family 180 317 IPR000620 GO:0016020
Stsc161g00010 614 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020
Stsc161g00010 614 PANTHER WAT1-RELATED PROTEIN 7 330 IPR030184 GO:0016020|GO:0022857
Stsc161g00010 614 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 321 - -
Stsc161g00010 614 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc161g00010 Stsc-Chr161 64025 83075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc161g00010 352 609 Nodulin-like Gene Family AT3G28050 41.111 1.56e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc161g00010 - - gmx:100792109 403.675