Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc161090g00001 GTCTCTGATTTTGGTCTTGCAAAGCTCATAAACCCGAAGGACCATAGGCATAGGACCTTGACTAGTGTGAGAGGAACCAGAGGATATTTAGCACCTGAGTGGCTTGCAAATCTTCCAATTACATCTAAATCCGATGTTTACAGCTTCGGCATGGTTTTGTTGGAGATTGTGAGCGGAAGGAGGAATTTCGAGGTCTCGGAGGAAACAAATAGGAAGAAGTTCTCCATTTGGGCCTATGAAGAGTTTGAGAAAGGCAACATCAATGGAATTTTGGACAAAAGGCTAGTAGACCAAGAAGTTGATATGGCGCAAGTGACGACAGCAATTCAGGCAAGCTTTTGGTGCATCCAGGAGCAGCCCTCGCATAGACCGACAATGAGCAGAGTGGTGCAAATGCTCGAAGGC 405 0.4617 VSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSFGMVLLEIVSGRRNFEVSEETNRKKFSIWAYEEFEKGNINGILDKRLVDQEVDMAQVTTAIQASFWCIQEQPSHRPTMSRVVQMLEG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc161090g00001 135 Gene3D Transferase(Phosphotransferase) domain 1 1 135 - -
Stsc161090g00001 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc161090g00001 135 Pfam Protein kinase domain 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc161090g00001 135 PANTHER OS07G0415500 PROTEIN 1 135 - -
Stsc161090g00001 135 SUPERFAMILY Protein kinase-like (PK-like) 1 133 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc161090g00001 Stsc-Chr161090 123 527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc161090g00001 1 135 Receptor kinase-like Gene Family AT5G20050 40.426 1.66e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc161090g00001 Pkinase 1.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc161090g00001 - - gmx:100305429 257.299