LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc160g00010	ATGGCTGCTTCTGCTGCAAAGAACAGTGGTAAATCCACAAAGTGTGATCATCAGAGGGTAATTGCTGAAAGTGGAAGCCAACAAGATTTGGAGATGATGATGATGATGGATAAGGGAAAAGGTGTTGAGAGGCGGCATTGGAAGCCAGTTTTTGATGAAGCTTCCATGTCAAATAGGCCTCATAAGAAGATTAATCAATCACCATCATCATCATCACCATTTCTACAACAACCTCCTTTATCTTCTTCTTCTTCATCTTCAAGAATAGTGTTCCCTTTTGCCTTTGAAGGCTCTCAAACTCAGAATCAAGCAATGCAATTCCTACACCAATTTGGAACCACAAACTTGCCCCTTTTCCATTCACCACAGCCACAAATTCAGCCATCACAACTACCATTACATCAAAACATGATATCTTTTGGGTCCCAACACCACCACCTTCAGAATCTTCAGTATTGGAGTGACACACTGAATCTAAGTCCAAGAGGGAGAGCCATGGCAATGATGAACCACAACAGAATAGGCCCTGATGGAAGGCCATTGTTTTCGCCTTCGCCTCCCGTGCCATTGAATGCTACAAAGCTCTACAGAGGTGTGAGGCAGCGCCATTGGGGGAAATGGGTGGCGGAGATTCGCCTCCCTCGCAATAGGACTCGCCTTTGGCTTGGGACATTCGACACGGCTGAGGACGCCGCCATGGCCTATGACCGAGAAGCCTTCAAGCTTAGAGGGGAGAATGCTAGGCTAAATTTCCCTGAACTCTTTCTCAACAAGGAGAAAGACCAATCAACAAAAATGGCACAAGAATCTCCTTCTTCTGCTTCTACATCAAAGGTAGAAGAGCCAGAGCCAGGGCCAGAGCCGGAGCCGGAGCCGGAGCCAGAAGAAGACATCACTATGCAGCAGGATTTGAACACTGAGAGCATGCCTCCGCCACCGCCACCGCCACCGCCACTATTGCCGCCTGCTTCACTCAATGCTGATAATGATTCAGGTGTTTCACAGTCTCAGGAGTTGGTTTGGGGGGAAATGGCTGCTTGGTTCAATTCAATTCCTGCAGCTTGGGGTCCTGGTAGTCCTGTGTGGGATGATTTGGACACAAACAACAATCTTCTGTTTCAATCACAGATTCCATTTATGACTCAGAATCAGCAAGAATTCAATGATGATGCTGAAGCTCATAGAACAACAACAGAGGGAGATAATAACACAAAACCAGGTTCTTCTTCCTCTTCTTCTTTCCCTATTAGACCCTTCTTCTGGAAGGATCAAGATTGA	1278	0.4648	MAASAAKNSGKSTKCDHQRVIAESGSQQDLEMMMMMDKGKGVERRHWKPVFDEASMSNRPHKKINQSPSSSSPFLQQPPLSSSSSSSRIVFPFAFEGSQTQNQAMQFLHQFGTTNLPLFHSPQPQIQPSQLPLHQNMISFGSQHHHLQNLQYWSDTLNLSPRGRAMAMMNHNRIGPDGRPLFSPSPPVPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKEKDQSTKMAQESPSSASTSKVEEPEPGPEPEPEPEPEEDITMQQDLNTESMPPPPPPPPPLLPPASLNADNDSGVSQSQELVWGEMAAWFNSIPAAWGPGSPVWDDLDTNNNLLFQSQIPFMTQNQQEFNDDAEAHRTTTEGDNNTKPGSSSSSSFPIRPFFWKDQD	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc160g00010	425	CDD	AP2	194	254	IPR001471	GO:0003700\|GO:0006355
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	60	83	-	-
	Stsc160g00010	425	Gene3D	AP2/ERF domain	195	253	IPR036955	GO:0003700\|GO:0006355
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	51	83	-	-
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	286	300	-	-
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	400	417	-	-
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	307	323	-	-
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	384	425	-	-
	Stsc160g00010	425	PRINTS	Ethylene responsive element binding protein signature	196	207	IPR001471	GO:0003700\|GO:0006355
	Stsc160g00010	425	PRINTS	Ethylene responsive element binding protein signature	218	234	IPR001471	GO:0003700\|GO:0006355
	Stsc160g00010	425	SUPERFAMILY	DNA-binding domain	195	253	IPR016177	GO:0003677
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	260	335	-	-
	Stsc160g00010	425	SMART	rav1_2	195	258	IPR001471	GO:0003700\|GO:0006355
	Stsc160g00010	425	ProSiteProfiles	AP2/ERF domain profile.	195	252	IPR001471	GO:0003700\|GO:0006355
	Stsc160g00010	425	MobiDBLite	consensus disorder prediction	1	30	-	-
	Stsc160g00010	425	FunFam	Ethylene-responsive transcription factor 2	194	253	-	-
	Stsc160g00010	425	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	19	365	-	-
	Stsc160g00010	425	Pfam	AP2 domain	196	244	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc160g00010	Stsc-Chr160	71757	73034	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc160g00010	29	366	AP2-EREBP Transcription Factor Family	AT4G28140	40.176	5.15e-58	190

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Stsc160g00010		AP2	2.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc160g00010	-		-	adu:107477889	662.144