Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc160836g00001 GTTGCTGGTGCTGGGGAGCTTCATTTGGAAATTTGTTTGAAGGACTTGCAAGAAGATTTCATGGGAGGAGCTGAGATTATCAAGTCAGACCCTGTTGTGTCTTTCCGTGAGACTGTTCTTGAGAGATCATGCCGCACTGTGATGAGCAAGTCACCCAACAAGCACAACCGTCTCTACATGGAAGCTAGGCCAACGGAGGAAGGTCTTGCAGAGGCCATTGATGATGGCAAGATCGGACCAAGGGATGACCCCAAAGTCCGTTCCAAGATCTTGTCCGAAGAGTATGGTTGGGACAAAGATCTTGCCAAGAAGATCTGGTGTTTTGGCCCTGAGACCACTGGACCCAATATGGTGGTTGATATGTGTAAGGGAGTCCAGTACTTGAATGAAATCAAGGATTCCGTGGTTGCCGGTTTCCAATGGGCATCAAAGGAAGGTGCTCTTGCTGAAGAGAACATGAGAGCTATCTGCTTCGAAGTCTGTGATGTTGTCCTCCACGCTGATGCTATCCACAGAGGTGGTGGTCAGATTATTCCTACTGCCAGGAGAGTCTTCTATGCTTCTCAGTTGAC 572 0.486 VAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPTEEGLAEAIDDGKIGPRDDPKVRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLT 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc160836g00001 191 Pfam Elongation factor G, domain IV 81 189 IPR005517 GO:0005525
Stsc160836g00001 191 CDD aeEF2_snRNP_like_IV 30 191 - -
Stsc160836g00001 191 SMART EFG_IV_2 76 191 IPR005517 GO:0005525
Stsc160836g00001 191 SUPERFAMILY Ribosomal protein S5 domain 2-like 33 190 IPR020568 -
Stsc160836g00001 191 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1 37 - -
Stsc160836g00001 191 FunFam Translation elongation factor 2 40 191 - -
Stsc160836g00001 191 Gene3D - 40 191 IPR014721 -
Stsc160836g00001 191 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc160836g00001 Stsc-Chr160836 1 572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc160836g00001 1 191 Eukaryotic Initiation Factors Gene Family AT1G56070 91.623 5.82e-127 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc160836g00001 K03234 - tcc:18594569 387.497