Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1603g00001 ATGTCGTTGGAAGAGCCCATTGCTCCAGCTTCGGAGCCCGCACCCGAACCAACCATTAACACCGAGCCTGCTCAAGAAGATAAAACCGAACCCGAGCCTGAGCCTGCTGCTGAAGCAGAAGAAGTAAACACCAAGGCTAAGAAATCCAAGGAGCCCAAACCTAAGAAGGCTCCCAAGCCTAGAAGCCCACCAACTCACCCTCCTTACCAAGAGATGATCAAGGATGCTATTGTTACGCTGAAGGAGAAAAACGGTTCGAGCCAATACGCGATTCAGAAGTTTCTCGAAGAAAAGCATAAGCACCTTCCATCGAACTTCAGAAAGCTTCTTTTGTCAAATTTGAAGAAGCTCGTAGCTTCTGGAAAGATCGTTAAGGTTAAAGGTTCCTTCAAGCTTCCAGCTACGAAAACGCCAGCATCATCGGCGCCTTCGCAGACAAAGAAGCCCGCGGCTGCTAAGTCCAAGCCCACGCAAAAGCCCAAGTCCAAGCCCAAGACGAAGCCCGCCACTAAGGTTAAGGCAACAAAAGCAAAGGCAACTAAGACTAAATCGGTTAAATCGGTCACAGCTAAGTCTAAGCCCAAGCCCGCACCAAAGCCCAAGGCTGTGGCTAAGTCTAAAGCAACTGCAGCAGCGAAGCCCAAGCCCAAGGCTGCTGTAGCCAAGCCCAAATCGAAACCCAAGGCTGCAGCTAAGCCACCTGCAAAGGCGTCGAGGATGTCGACTAGGAGTTCGCCGGGAAGGAAGGCTGCCCCCTCTGCAAAGCCGGCAGCGAAGAAGGCTGTGGCGGCGAAGAAGAGCGTAAAGCCCAAGACCAGGAGCGTAAGGTCTCCGGCGAAGAAGGTTTCGATGAAGAGGGGTGGTAGGAAATGA 873 0.5235 MSLEEPIAPASEPAPEPTINTEPAQEDKTEPEPEPAAEAEEVNTKAKKSKEPKPKKAPKPRSPPTHPPYQEMIKDAIVTLKEKNGSSQYAIQKFLEEKHKHLPSNFRKLLLSNLKKLVASGKIVKVKGSFKLPATKTPASSAPSQTKKPAAAKSKPTQKPKSKPKTKPATKVKATKAKATKTKSVKSVTAKSKPKPAPKPKAVAKSKATAAAKPKPKAAVAKPKSKPKAAAKPPAKASRMSTRSSPGRKAAPSAKPAAKKAVAAKKSVKPKTRSVRSPAKKVSMKRGGRK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1603g00001 290 Pfam linker histone H1 and H5 family 66 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc1603g00001 290 SUPERFAMILY "Winged helix" DNA-binding domain 62 143 IPR036390 -
Stsc1603g00001 290 MobiDBLite consensus disorder prediction 127 290 - -
Stsc1603g00001 290 MobiDBLite consensus disorder prediction 158 180 - -
Stsc1603g00001 290 Gene3D - 61 140 IPR036388 -
Stsc1603g00001 290 FunFam Histone H1 60 146 - -
Stsc1603g00001 290 PANTHER HISTONE H1 42 269 - -
Stsc1603g00001 290 CDD H15 65 142 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc1603g00001 290 MobiDBLite consensus disorder prediction 1 75 - -
Stsc1603g00001 290 PRINTS Histone H5 signature 52 73 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc1603g00001 290 PRINTS Histone H5 signature 211 230 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc1603g00001 290 PRINTS Histone H5 signature 189 206 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc1603g00001 290 PRINTS Histone H5 signature 155 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc1603g00001 290 PRINTS Histone H5 signature 79 96 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc1603g00001 290 SMART h15plus2 63 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc1603g00001 290 MobiDBLite consensus disorder prediction 134 152 - -
Stsc1603g00001 290 MobiDBLite consensus disorder prediction 262 290 - -
Stsc1603g00001 290 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 65 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1603g00001 Stsc-Chr1603 8377 9679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1603g00001 72 141 Single Myb Histone (SMH) Gene Family AT1G49950 41.429 1.04e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1603g00001 K11275 - zju:107425932 156.377