Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc15g00012 ATGAAACTCAAAACTCTATTCTTCTTCTTCTTCTTCTGTCTCTTTCTTCTCATTGCAACCTCATTTGTTTCTGCAGCCACTCTACAACAACAGGAAGTGGAAGTTCTGAAGGAGATAGGGAAGAGACTTGGGAAGAAGGATTGGGACTTCAGCATAGATCCATGCAGTGGAGAAGGAAACTGGGCTTCCCCTTCTGCTTCTAAATCTTACTCTGCAATAAATGCTGTAACTTGTAACTGTTCTTTCTCTAATAACAATCTCTGCCATGTTGTTAGCATAGTTCTAAAATCACAAAACCTTTCTGGCACTCTTCCTCCTGAGTTTGCAAAGTTGCCTTACCTGCAAGAAATTGATCTCACTCTCAACTACCTTAATGGCACAATCCCAAAGCAATGGAGTTCCTTGAGTCTTGTCAACATTTCCCTTTATGGAAATCGAATATCGGGTCAAATTCCAAAGGAGCTGGGAAACATAACCTCCCTGAAAAGTTTGGTCTTGGAGTTCAATCAACTCTCTGGAGAGCTTCCTCCTGAGCTTGGGAATCTTTTGCAGCTTGAAAGATTGCATCTTACCTCGAACTTTTTTACTGGGAATTTACCTGCTACATTTGCTAGGCTCAGTAAATTGAATTACATTCGGCTTGGCGATAATCAATTTTCCGGAACAATACCGAATTTTATTCAGAGCTGGACAAGTCTTCAGAGACTGGTGATGCATGGGAGTGGTATGAGTGGACCAATTCCTTCTGGAATTTCATTTCTGAAAAACCTTACTGACTTGAGAATCAGTGACTTGAAAGGACCAGATTCTTATTTTCCACCACTTAGTAACTTGACAAATTTGCAAACACTGGTACTGAGAAGTTGCAATCTTATAGGACCGGTTCCTGAATATCTCGGAAATGTAACTACTTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGAGTTATCCCAAACTCATTCGGTGGCCTAATGGACATGAATATACTGTACTTAACTGGAAACTTTTTCACTGGACCACTGCCCAATTGGATTGCTAATCCAGATTACACGGATCTTTCGTATAACAACTTCAGCATCGAAAAGCCAGAGCAGTTGACATGTCAACAAGGAAGTGTAAACCTATTTGCATCATCTTTGAAGGGAAACTACTCGGGAACTTATCCATGTTTGGGGATCACCAACTGTCCTAAACCTTCATACTCTCTCCATATAAATTGTGGAGGGAAGCTCATAACTTATAATGGAAACATCACATATGATGAAGATTCACAAGAAGCTGGACCAGCGAGATCTCTTCGTAGCGGATCAAACTGGGCAGTTAGCAACACTGGTCACTTCTTTGATAGTGGTGTTGTGGACTATTATACATGGTCTAACTCTAACATGTCTAATAAGCTTGCTATGAACAATGCCGAACTGTACACGGATGCACGCGTTTCGGCTCTTTCTCTGACATATTATGCATTCTGCTTGGGAAATGGAAGCTACACTGTGAATCTCCATTTTGCTGAGATAATGTTTACTGATGATCAAACATATAGTAGCCTCGGAAGGCGTGTATTCGACATATATATTCAGAGGAAGTTGTTGCTGAAGGATTTTGATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAGAATTTTACTGCAAATGTGACCGGTGGAACCTTGGAGATCCGGTTACAATGGGCCGGGAAAGGGACAACTGGTATTCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTCAATCCAAACTTTACACCCCCATTGGAAAAAGAAAGTAGCAAAAAAGGAAGTGGCATTCCGGTGGGGGCTATCGTCGGAATTGTATTGGCTGGAGCACTTGTTATTATCATGGTATTTGGTATAGCTTGGTGGAAAGGATGTTTAGGACAAAAAGGTTCATTACATAGAGAGCTACAGGGTTTGGATCTTAAAACCGGCATATTTACCTTAAGGCAAATCAAAGCAGCAACAAACAACTTTGATTTCGCCTGTAAGATTGGAGAAGGAGGGTTTGGTCCAGTATATAAGGGTATTCTTCCAGATGGGACAGTAATAGCAGTTAAACAGCTTTCTTCTCGATCAAGGCAAGGGAATCGCGAGTTCACAAACGAGATCGGCATGATTTCTGCTTTGCAACACCCATGTCTGGTTAAGCTCTATGGGTGTTGTATGGAGGGAGATCAATTGTTGTTGATATATGAATATATGGAAAACAATAGCCTTGCCAGTGCTTTGTTTGCCAAAGAGAAAACTCAGTTGAAATTGGACTGGTCAACACGGCGCAAGATTTGTATAGGCATTGCTAAAGGCTTGGCTTACCTCCATGGAGAGTCTAGATTAAAAATAGTTCATAGGGACATCAAGGCTACTAATGTGTTGCTGGATAAAGATCTAAACCCAAAGATATCTGATTTCGGTTTGGCCAAGCTTCATGATGAGGGTCAAACACACATAAGCACTAGAGTGGCCGGCACTTATGGATATATGGCACCTGAATATGCAATGCATGGTTATCTGACGGACAAAGCAGATGTTTATAGTTTCGGAGTTGTTGCCTTGGAAATAGTCAGTGGCAAAAGCAATGCCATGAGCTGGCAAAGGGAAGAATGCTTCTCTCTTCTTGATTGGGCTCTTCTCTTAAAAGAGAAAGGTGATCTAATGGACCTAGTTGATGAGAGGTTGAGTTCACACTTCAAAAAAGATGAAGCAATGCTCATCATCAATGTGGCTCTTCTCTGCACAAATGCCTCTCCATTGCACAGGCCAACCATGTCTTCGGTCGTAAGCATGCTCGAAGGCAAAACCTCTGTACAAGAAGTGGTGCCGGACACGACGCAGGTATTCGGCGAGAACAAGTTAGAAATGATCAGAGACTATTACCAACAACAGAAGAAGGGGAAAGATAAGATTCCAGACACTGAAGAAGTAAGCACCTCAACAAATGAAACTGCTGCATTTGTGACTAATTCAGATGTCAATTCAATGAGCATGGATTCTTCTTATTGGGAGGAAAAAAGTGGTAGATGA 3063 0.4127 MKLKTLFFFFFFCLFLLIATSFVSAATLQQQEVEVLKEIGKRLGKKDWDFSIDPCSGEGNWASPSASKSYSAINAVTCNCSFSNNNLCHVVSIVLKSQNLSGTLPPEFAKLPYLQEIDLTLNYLNGTIPKQWSSLSLVNISLYGNRISGQIPKELGNITSLKSLVLEFNQLSGELPPELGNLLQLERLHLTSNFFTGNLPATFARLSKLNYIRLGDNQFSGTIPNFIQSWTSLQRLVMHGSGMSGPIPSGISFLKNLTDLRISDLKGPDSYFPPLSNLTNLQTLVLRSCNLIGPVPEYLGNVTTLRSLDLSFNKLSGVIPNSFGGLMDMNILYLTGNFFTGPLPNWIANPDYTDLSYNNFSIEKPEQLTCQQGSVNLFASSLKGNYSGTYPCLGITNCPKPSYSLHINCGGKLITYNGNITYDEDSQEAGPARSLRSGSNWAVSNTGHFFDSGVVDYYTWSNSNMSNKLAMNNAELYTDARVSALSLTYYAFCLGNGSYTVNLHFAEIMFTDDQTYSSLGRRVFDIYIQRKLLLKDFDIAKEAGGVGKAIIKNFTANVTGGTLEIRLQWAGKGTTGIPFGSVYGPLISAISVNPNFTPPLEKESSKKGSGIPVGAIVGIVLAGALVIIMVFGIAWWKGCLGQKGSLHRELQGLDLKTGIFTLRQIKAATNNFDFACKIGEGGFGPVYKGILPDGTVIAVKQLSSRSRQGNREFTNEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLASALFAKEKTQLKLDWSTRRKICIGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLHDEGQTHISTRVAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKSNAMSWQREECFSLLDWALLLKEKGDLMDLVDERLSSHFKKDEAMLIINVALLCTNASPLHRPTMSSVVSMLEGKTSVQEVVPDTTQVFGENKLEMIRDYYQQQKKGKDKIPDTEEVSTSTNETAAFVTNSDVNSMSMDSSYWEEKSGR 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc15g00012 1020 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 266 - -
Stsc15g00012 1020 SUPERFAMILY L domain-like 85 361 - -
Stsc15g00012 1020 Gene3D Ribonuclease Inhibitor 45 200 IPR032675 -
Stsc15g00012 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 595 - -
Stsc15g00012 1020 Gene3D Transferase(Phosphotransferase) domain 1 748 958 - -
Stsc15g00012 1020 Pfam Protein tyrosine and serine/threonine kinase 674 943 IPR001245 GO:0004672|GO:0006468
Stsc15g00012 1020 Pfam Malectin domain 404 590 IPR021720 -
Stsc15g00012 1020 SMART serkin_6 672 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc15g00012 1020 CDD STKc_IRAK 678 945 - -
Stsc15g00012 1020 ProSiteProfiles Protein kinase domain profile. 672 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc15g00012 1020 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 747 - -
Stsc15g00012 1020 SUPERFAMILY Protein kinase-like (PK-like) 658 944 IPR011009 -
Stsc15g00012 1020 Gene3D - 401 595 - -
Stsc15g00012 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 971 - -
Stsc15g00012 1020 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 273 368 - -
Stsc15g00012 1020 Gene3D Phosphorylase Kinase; domain 1 642 747 - -
Stsc15g00012 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase 748 955 - -
Stsc15g00012 1020 Gene3D Ribonuclease Inhibitor 269 387 IPR032675 -
Stsc15g00012 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Stsc15g00012 1020 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515
Stsc15g00012 1020 Gene3D Ribonuclease Inhibitor 201 268 IPR032675 -
Stsc15g00012 1020 MobiDBLite consensus disorder prediction 976 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc15g00012 Stsc-Chr15 82444 89800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc15g00012 22 973 Receptor kinase-like Gene Family AT1G53420 53.486 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc15g00012 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc15g00012 - - gmx:100786496 1501.88