Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc15g00011 ATGATACTCATACCTACGTTCTTTCTCTCCCTTCTCCTTCCTTCATCTTCATTTGTTTCTGGAGCCACTCTAAAACCACAAGAAGTGGAAGTTCTGAAGGAGATTGGGAACACGCTTGGGAAGAAGGATTGGGACTTCAGCGTAGATCCATGTAGCGGAAAACGAAACTGGTCTTCCCCTGCTTCTAAATCTTACTCAGAAATAAATGCAGTAACTTGTGATTGTTCTTTCTCTAATCGCACTCTCTGCCATGTTGTTAGCATAGTTCTGAAATCACAAAATCTTTCTGGCACTCTTCCTCCGCAGCTTGCAAGGTTGCCTTACCTACAAGAAATTGATCTTACCCTCAACTACCTTAACGGCACAATCCCAAAGCAATGGAGTTCCTTGAATCTTGTCAACATTTCTCTTTATGGAAATCGTGTAACAGGTCCAATCCCAAAGGAACTAGGAAATATAACCACTCTCAAAATCTTGGTCTTGGAGTTCAATCAATTATCTGGAAATCTACCCCCAGAGCTTGGGAACCTTCCCCAAATTGAAACACTACTTCTTACCTCCAATAATTTCACTGGAGAGTTGCCTGCATCATTTGCTAACCTCACTACACTGAAGAACATTCGACTAGGTGACAATCAATTCTCTGGAGCAATACCCAATTTTATTCAGAACTGGAAAAGTGTTGAGACAATGGTAATCCAAGGTAGTGGCTTCAGTGGTCCAATTCCTTCAGGAATTTCACTTTTGAAGAACCTTACTGACTTGAGAATAAGTGACTTGAATGGATCCAATTCACCTTTTCCCCAACTTGATAAAATAACAAATTTGCAGACACTAATGTTGAGGAGTTGCAATATTATTGGAGCATTGCCTGAAAATCTTGGAAACTTGACTAATTTGAAAGTGCTAGATCTCAGCAACAACAAATTAAGTGGACCGATTCCGAGCAGCTTTGCTGAACTACAGAAAATGGACATGCTATTTTTAACTAGGAACCTTCTAACTGGACCACTGCCCGATTGGATATCTAAACCAGATTTTGTAGACATCTCATTTAACAACTTCAGCATAAGAACGTCGGAGGAGCCAGGTTGTCAGCAGGGAAGCACGAACTTATTTGCATCCTCCTTGAATGGCAACAGCATAGGAAATATTTCATGTCTGCAAAACTCTGGCTGTACTAAAACTTGGTACTCTCTCTACATAAATTGTGGCGGAAAGCAAGTAGTTTCTAATGGAAGTAAGACATATGATGATGATTCGGGTACGGCTGGACCAGCAAGATTTCTCTCGGAAGGAACAAACTGGGCACTCATTAACACTGGTCACTTCTTTGATAGTGGTCGTGCTGACTACTACACATGGTCTACTACAAATAAGCTTGCAATGGAAAATGATGAACTATATAGGGATGCACGTGTTTCTCCCGGTTCTCTGACTTATTATGCATTTTGCATGGGAAATGGAAACTACACAGTAAATCTTCATTTTGCTGAGATAATGTTCACAGATGATAAAACATACAGCAGCCTGGGAAGGCGTGTATTTGACATTTACATTCAGAGAGAGTTGGTGTTAAAGGATTTCAATATTGCAAAGGAAGCAGGGGGTGTTGGGAAGGCAGTCATAAAAAACTTCACTGCTGTTGTGACTAGTAATGCATTGGAGATTCGTTTATATTGGGCTGGAAAAGGGACAACTACTATTCCATTCGGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTTGATCCAGATTTTGTACCGCCTCCTCCGTCCGCAAATGGTGGCGGCTTGTCTGTAGGCGCTATTGTTGCTATTGTTGTTGCAGGAGCAATTATTATCATGTTGATTTTCGGCATACTTTGGTGGAAGCACTGTTTTAGACAAAAAAGTGCAGTGGCCAAAGAACTCAAGGGCATAGACTCACAAACCACCATATTCACATTAAGGCAAATAAGAGCAGCAACAAACAACTTTGATAGAGCCTTCAAGATTGGACAGGGAGGATTTGGTCCTGTCTACAAGGGTGTCCTGACAGATGGCACAAGAGTAGCAGTTAAGCAACTTTCCGATAAATCAAAGCAAGGGAATCGTGAGTTTATAACTGAGATTGGAATGATTTCTGCGTTGAGGCACCCTTACTTGGTTAAACTCTATGGATTTTGTATGGAGGAGGATCAGTTGTTGCTTGTATATGAATACATGGAGAATAATAGCCTTGCACATGCTTTATTCAACGGAAATGATGACAGAGGGAAAAGTGAATTGAGATTAGACTGGCGAACAAGGCAGAGGATTTGTATCGGTATTGCTAAAGGTTTGGCTTACCTTCATGGAGAGTCAAGATTGAAGATCGTTCATAGGGACATTAAAGCCACTAATGTGTTGTTGGATAAGGATCTCAACCCCAAGATATCAGATTTTGGTTTGGCCAAGCTTGATGAACAAAACAAAACACACATAAGCACCAGAATAGCAGGCACTTATGGATACATGGCTCCCGAGTATGCGATGCATGGTTATTTAACAGACAAAGCTGATGTTTATAGTTTCGGAATAGTCGTCTTGGAAATAGTTAGTGGGAAGAGCAATACGCTAACAAACCCCATCGATGAATACTTCTCTCTTCTTGATTGGGCAAATCTCTTGAAAGAAAAAGGCAATTTATTGGAACTTGTTGATGGGAGGTTGGGTGAAGACTTCAACAAAGAGGAGGCAATGGTGATGATCAAAGTGGCTCTTCTAAGCACCAACGCCTCCCCGGTGCTCCGGCCAACCATGGCTTCGGTGGTAAGCATGCTTGAAGGAAGCACAGTTGTTCCAGATGCTATGCCAGGCACAAATGATTTGTTGGATGAGAAGAAATTTGAGTTGATGAGACAACATTACCAACAACATAAGGGAGAGAAAGAGATAAGTGAGACTCCAAGCTATAGTATCTCAGTTGGTGAAACTAGTGCAGTTTTATCTGACACTGATTCTTCTTATTTGAATGCCAAAGATTAA 3012 0.411 MILIPTFFLSLLLPSSSFVSGATLKPQEVEVLKEIGNTLGKKDWDFSVDPCSGKRNWSSPASKSYSEINAVTCDCSFSNRTLCHVVSIVLKSQNLSGTLPPQLARLPYLQEIDLTLNYLNGTIPKQWSSLNLVNISLYGNRVTGPIPKELGNITTLKILVLEFNQLSGNLPPELGNLPQIETLLLTSNNFTGELPASFANLTTLKNIRLGDNQFSGAIPNFIQNWKSVETMVIQGSGFSGPIPSGISLLKNLTDLRISDLNGSNSPFPQLDKITNLQTLMLRSCNIIGALPENLGNLTNLKVLDLSNNKLSGPIPSSFAELQKMDMLFLTRNLLTGPLPDWISKPDFVDISFNNFSIRTSEEPGCQQGSTNLFASSLNGNSIGNISCLQNSGCTKTWYSLYINCGGKQVVSNGSKTYDDDSGTAGPARFLSEGTNWALINTGHFFDSGRADYYTWSTTNKLAMENDELYRDARVSPGSLTYYAFCMGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRELVLKDFNIAKEAGGVGKAVIKNFTAVVTSNALEIRLYWAGKGTTTIPFGSVYGPLISAISVDPDFVPPPPSANGGGLSVGAIVAIVVAGAIIIMLIFGILWWKHCFRQKSAVAKELKGIDSQTTIFTLRQIRAATNNFDRAFKIGQGGFGPVYKGVLTDGTRVAVKQLSDKSKQGNREFITEIGMISALRHPYLVKLYGFCMEEDQLLLVYEYMENNSLAHALFNGNDDRGKSELRLDWRTRQRICIGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEQNKTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGKSNTLTNPIDEYFSLLDWANLLKEKGNLLELVDGRLGEDFNKEEAMVMIKVALLSTNASPVLRPTMASVVSMLEGSTVVPDAMPGTNDLLDEKKFELMRQHYQQHKGEKEISETPSYSISVGETSAVLSDTDSSYLNAKD 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc15g00011 1003 Gene3D - 397 586 - -
Stsc15g00011 1003 Gene3D Transferase(Phosphotransferase) domain 1 737 944 - -
Stsc15g00011 1003 SUPERFAMILY L domain-like 79 355 - -
Stsc15g00011 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 947 - -
Stsc15g00011 1003 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 397 587 - -
Stsc15g00011 1003 ProSiteProfiles Protein kinase domain profile. 661 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc15g00011 1003 SMART serkin_6 661 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc15g00011 1003 CDD STKc_IRAK 667 938 - -
Stsc15g00011 1003 Pfam Protein kinase domain 665 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc15g00011 1003 Pfam Leucine rich repeat 274 334 IPR001611 GO:0005515
Stsc15g00011 1003 Gene3D Ribonuclease Inhibitor 263 381 IPR032675 -
Stsc15g00011 1003 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 25 261 - -
Stsc15g00011 1003 Gene3D Ribonuclease Inhibitor 189 262 IPR032675 -
Stsc15g00011 1003 Pfam Malectin domain 399 582 IPR021720 -
Stsc15g00011 1003 Gene3D Phosphorylase Kinase; domain 1 625 736 - -
Stsc15g00011 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 968 - -
Stsc15g00011 1003 SUPERFAMILY Protein kinase-like (PK-like) 644 938 IPR011009 -
Stsc15g00011 1003 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 267 357 - -
Stsc15g00011 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Stsc15g00011 1003 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Stsc15g00011 1003 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Stsc15g00011 1003 ProSiteProfiles Leucine-rich repeat profile. 299 320 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc15g00011 Stsc-Chr15 72103 80536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc15g00011 18 942 Receptor kinase-like Gene Family AT1G53420 54.506 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc15g00011 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc15g00011 - - gmx:100786496 1330.08