Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1597g00001 ATGGCGATGTCTAGAAGAGAAATGGATCGGATCAAAGGCCCATGGAGCCCGGAAGAAGATGAAGCCCTGCAGAGGCTGGTGGAAAGGCACGGACCCAGGAACTGGACGTTGATAAGCAAGTCCATTCCAGGCCGCTCTGGGAAGTCCTGCAGGCTTAGATGGTGTAACCAACTTTCACCTCAGGTTGAGCACCGGGCCTTCACGCCCGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACAATAGCCCGACTCCTGACTGGTCGAACAGACAACGCGGTAAAGAATCACTGGAACTCAACGCTCAAGCGCAAGTGCTCATCCATGATGATCGATGAGCCTGCGACAGGCCCGGTAGACTATGAGGGAGGTTATAATACTCGGCCCGCGAAGAGGTCTGCGAGCGCAGGCGCTGCCATGCCGTTATCCGCTGGGCTTCACATGAGCCCACCATCGCCGGGAAGCCCGTCGGGATCTGACGGCAGTGAGTGCAGCGTTCGCGCCGTCTCTCCGTCTCGCGTGTTGAGGCCCGTGCCGTGGACTGTCGTTCCTCCGATCGAAACTGCGTCGTCTTCGGAGGACCCTCCGACGTCGTTGTCGCTGTCGCCGCCGGGTGTAGACGTTGCCGTGGAAGTCTCCAATCGTGTCACGGAATCTATGACACATGCCGTTTTGCCAGCTATGGCGATTGCGATGACTTCGGCGCTGTCTTCAACCGCTGTAACAACAGCTGATCCACCGCCGCCATTGCCATCGACACCGCCACAACAGCAACTGGTGGCGCCGTTTAGTTTTAGCACGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAGCGCAATGGGATGTGTTTTCAGGCTGCGGGTGGGTTCAGAAACGTTTCGGTGAATCGAGTTGGAATTAGCAGAGTCAACTCATGA 966 0.5652 MAMSRREMDRIKGPWSPEEDEALQRLVERHGPRNWTLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPDEDETIIRAHARFGNKWATIARLLTGRTDNAVKNHWNSTLKRKCSSMMIDEPATGPVDYEGGYNTRPAKRSASAGAAMPLSAGLHMSPPSPGSPSGSDGSECSVRAVSPSRVLRPVPWTVVPPIETASSSEDPPTSLSLSPPGVDVAVEVSNRVTESMTHAVLPAMAIAMTSALSSTAVTTADPPPPLPSTPPQQQLVAPFSFSTELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISRVNS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1597g00001 321 MobiDBLite consensus disorder prediction 123 177 - -
Stsc1597g00001 321 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Stsc1597g00001 321 SMART sant 11 60 IPR001005 -
Stsc1597g00001 321 SMART sant 63 111 IPR001005 -
Stsc1597g00001 321 FunFam Transcription factor MYB44 66 112 - -
Stsc1597g00001 321 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Stsc1597g00001 321 Gene3D - 11 63 - -
Stsc1597g00001 321 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Stsc1597g00001 321 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Stsc1597g00001 321 MobiDBLite consensus disorder prediction 157 173 - -
Stsc1597g00001 321 CDD SANT 14 56 IPR001005 -
Stsc1597g00001 321 Gene3D - 65 124 - -
Stsc1597g00001 321 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Stsc1597g00001 321 CDD SANT 66 109 IPR001005 -
Stsc1597g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Stsc1597g00001 321 FunFam MYB transcription factor 12 63 - -
Stsc1597g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Stsc1597g00001 321 PANTHER MYB PROTEIN-RELATED 12 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1597g00001 Stsc-Chr1597 6257 8455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1597g00001 4 319 MYB Transcription Factor Family AT4G37260 50.592 5.30e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc1597g00001 Myb_DNA-binding 5.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1597g00001 K09422 - gmx:780556 385.185