Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc157444g00001 ATGGAGCTCACTGTTGTGCTGGAGGATCTTTCATCAAGGAGGGCTGGAAGGAGTGATGCTGGCCTTGATAGCCCTACAAAGAGAATGAGGCGCGAATCTCAGTCCAAAACTATCAAGGTGATGATCAGTTATGCAGCAGAGATCCCAATTCAAGCAATTGCAGATGCGTTGCGCGGACAGGATTCGGAGCACTCTCAGGAAGCATTGAGGGTCCTTGACATCATCCTGAGGCAGCATGCAGCAAAGCAGGGCTGTTTCCTCGTTCGCCAATCCTTCTTCCATGACACTCCAAGGAATTATGCTGAATTAGGAGGTGGTGTTCAAAGCCTCCGCGGTTTCCATTCAAGTTTCCGTCCCACTCAAGGAGGATTATCTCTGAATATTGATGTGTCAACTACTATGGTTGTAAAGCCTGGCCCTGTACTGGACTTCCTTTGTTCTAATCTAAATGTGAGTCATCCAAACCATATTGATTGGACCAAGGCAAAAAGAGTGCTGAAAAGCCTCAGAATCAGTGTTAATAATATGGAGTACAAAATCAGTGGACTCAGTGAGAATCCCTGCAGGTCTCAAATTTTTTCATTGAAAGATGGGAAGGATGAAAATGGTGAACCAAGGACAACTGAAATCACA 633 0.455 MELTVVLEDLSSRRAGRSDAGLDSPTKRMRRESQSKTIKVMISYAAEIPIQAIADALRGQDSEHSQEALRVLDIILRQHAAKQGCFLVRQSFFHDTPRNYAELGGGVQSLRGFHSSFRPTQGGLSLNIDVSTTMVVKPGPVLDFLCSNLNVSHPNHIDWTKAKRVLKSLRISVNNMEYKISGLSENPCRSQIFSLKDGKDENGEPRTTEIT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc157444g00001 211 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 25 206 - -
Stsc157444g00001 211 Pfam Argonaute linker 1 domain 88 136 IPR014811 -
Stsc157444g00001 211 SUPERFAMILY PAZ domain 62 199 IPR036085 GO:0005515
Stsc157444g00001 211 CDD PAZ_argonaute_like 138 201 - -
Stsc157444g00001 211 Gene3D paz domain 132 211 - -
Stsc157444g00001 211 SMART DUF1785_2 86 138 IPR014811 -
Stsc157444g00001 211 Pfam N-terminal domain of argonaute 23 76 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc157444g00001 Stsc-Chr157444 119 1197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc157444g00001 2 202 Eukaryotic Initiation Factors Gene Family AT5G43810 31.429 8.75e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc157444g00001 K11593 - rvl:131301483 280.026