LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc156g00015	ATGACGAGCGCTTCGGAGCTATTCCACACCAGGAGGCATCGTTTGGGACGATACAATAATCTAGGGCTAGACTCCGACCATGTTCCCGACCTCCACCATCCTCGCCGCCATTCTCGCCGCCTCCCTCACCCTCCCTCTCCCTCCTCCTCCGAGCGTGCAGCAGTTGACAGATTTGAGAGGAGGTATCGGCGCTCTCTGTTGAATACGGAAAGCGCGAGAGGCGTGGGTGCTCCTCCAAGATTGAATCCCTCTGATAGACTCCCTGTAGGCGTCTTACTTGCACGCGCTAGGCTCGTTGAGAGACTCAGAGGAGACCCTCTCTCACCTAACAGGCAATATGAGAGAGATTCGAATTCAATAAGCAGGGATCTAGAAAGTGATTTTATTTCTGACTTGACTTCTCAAATGGGAAGGTCCCATCTATTGCAAGAAAAACCACCTGGACTCACTCAGGAAGCCCTAGACTGTTTACATGTTCAAGTTTTTAGCAGCGGGGATGCAGGTCAGGATTGCAGCATATGCTTGGAATCTTTTGTGGATGGAGATGAGCTCATATGTTTGCCATGTCACCATAAATTTCACTCTGCTTGTTTAGATCCCTGGGTTCGCACCTGCGGAGACTGTCCATACTGTCGACGACGTATACTTGTAAATAACAACCAACACGGGCGGCTCAGTAGTGAGTAG	687	0.5051	MTSASELFHTRRHRLGRYNNLGLDSDHVPDLHHPRRHSRRLPHPPSPSSSERAAVDRFERRYRRSLLNTESARGVGAPPRLNPSDRLPVGVLLARARLVERLRGDPLSPNRQYERDSNSISRDLESDFISDLTSQMGRSHLLQEKPPGLTQEALDCLHVQVFSSGDAGQDCSICLESFVDGDELICLPCHHKFHSACLDPWVRTCGDCPYCRRRILVNNNQHGRLSSE	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc156g00015	228	MobiDBLite	consensus disorder prediction	19	55	-	-
	Stsc156g00015	228	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	135	216	IPR013083	-
	Stsc156g00015	228	SUPERFAMILY	RING/U-box	170	218	-	-
	Stsc156g00015	228	ProSiteProfiles	Zinc finger RING-type profile.	171	212	IPR001841	-
	Stsc156g00015	228	Pfam	Ring finger domain	170	212	IPR001841	-
	Stsc156g00015	228	PANTHER	SI:CH211-59O9.10	27	220	-	-
	Stsc156g00015	228	SMART	ring_2	171	211	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc156g00015	Stsc-Chr156	76199	77603	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc156g00015	1	215	C3H Transcription Factor Family	AT1G49850	38.931	1.06e-36	127

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc156g00015	-		-	aip:107619305	312.768