Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc1567g00002 | ATGGAGAATTATTTAAATGAGAACTTTGGAGGGGTGAAGTCCAAGAACTCTGACGGAGAATCTCTAGGTAGATGGAGGACACTATGTGGAGTTGTCAAGAACCCCAAAAGACGTTTTCGTTTTACTGCCAATCTCTCCAAAAGGGAAGAAGCCGCAGCTATGCGTCGCACTAATCAGTTAACTGTACCACTCATGAAGAACAAGACAGCAGGTGTGCAAGTGGGTGATTACACTGTACCACAGCATGTTAAAGCTGCAGGTTTTCAAATCGATGCAGAGGAACTGGGATCTATTGTTGAAGGACATGACGTAAAGAAATTGAAATTCCATGGCGGTGTTAACGGCATTGCACAAAAGCTTTCAACATCAACAACCAAGGGTCTCAGTGACAGTTATGAATCTCAGCATAGGAGAGAGGAGATTTTTGGAGTGAACCAATTTACCGAAGCCGAAGTTCGAAGCTTCTGGGTTTATGTTTTCGAAGCCCTTCACGATATGACTCTCATGATCCTTGGAGTGTGTGCTGTTGTGTCGTTGATAGTTGGAATAGCCACGGAAGGATGGCCAAAGGGCGCTCACGACGGTTTGGGAATCGTCATGAGCATCTTATTGGTCGTCTTTGTAACCGCCACAAGTGACTACCGGCAATCCTTACAGTTCAAGGATTTAGACAAGGAGAAGAAAAAGATTTCAGTTCAGACAACAAGAAACGGTTACAGGCAGAAAATGTCAATTTACAATTTACTCCCTGGCGACATTGTTCATCTTGCCATCGGAGATCAAGTCCCTGCAGACGGACTGTTTGTTTCGGGATTCTCCGTCTCGATCGATGAGTCGAGTTTAACCGGAGAAAGCGAACCGGTTATGGTTACTTCCCAGACTCCGTTTCTTCTTTCAGGAACCAAAGTCCAAGACGGATCATGCACAATGATGGTTACAACAGTAGGAATGAGAACTCAGTGGGGCAAGTTAATGGCAACACTAAGCGAAGGTGGTGATGATGAGACACCATTGCAGGTGAAGCTGAATGGAGTGGCAACCATTATTGGAAAGATAGGACTGTTCTTCTCCGTCATTACTTTCGTGGTGTTGGTGAAAGGACTAATGGGAAAGAAAATTAACGAAGGGAGGTTTTGGTGGTGGTCTTCAGAGGATTGCTTGGAGATGCTGGAATACTTCGCCATTGCAGTAACCATTGTTGTTGTTGCTGTCCCTGAGGGGCTTCCGTTGGCAGTTACATTGAGCCTTGCGTTTGCCATGAAGAAGATGATGAATGATAAGGCACTTGTGCGGCACTTGGCAGCTTGTGAGACCATGGGATCTGCCACAACTATATGTAGTGACAAAACCGGCACACTAACAACCAACCGCATGACTGTTGTGAAAACATGCATTTGTATGAAGGTTAACGAAGTGGCCAATAATAAGGTCTTTGAAAAACTCCCAGATTTGGCATTAAAGCTGCTACTGCAGTCAATATTCAACAACACAGGTGGTGAAGTTGTGGTTAACAAAATGGGCAAGCGTGGGATTTTGGGTACTCCAACTGAATCAGCTATTTTGGAATTTGGACTCTCACTGGGTGGGGAGCCACAAGCAGAGAGAGAAAAATGTCAGCTTATAAAAGTTGAGCCATTCAACTCTGAAAAGAAAAGAATGGGTGTGGTTGTGAAGCTCCACGATGGAGGAGGTTTTAGAGCACATTGCAAAGGTGCTTCTGAAATAATCCTTGCAGCTTGTGACAAAGTAATAAACTCTAATGGCGAGATTGTGTCCCTTGATCAAGAAGCAAGTAACTATCTTAGCAAGACAATAAACCAGTTTGCTAGTGAGGCACTTAGGACTCTTTGCCTTGCGTATATGGAATTGGAAAATGGGTTCTCTTCAGAAGAACATATTCCTTCTTCAGGTTACACTTGTATAGGAATTGTTGGGATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTTGCGGTGTGTCGGTCAGCCGGAATTACAAAAAACTCAGGAGGAGTTGTTTGA | 2025 | 0.442 | MENYLNENFGGVKSKNSDGESLGRWRTLCGVVKNPKRRFRFTANLSKREEAAAMRRTNQLTVPLMKNKTAGVQVGDYTVPQHVKAAGFQIDAEELGSIVEGHDVKKLKFHGGVNGIAQKLSTSTTKGLSDSYESQHRREEIFGVNQFTEAEVRSFWVYVFEALHDMTLMILGVCAVVSLIVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYRQSLQFKDLDKEKKKISVQTTRNGYRQKMSIYNLLPGDIVHLAIGDQVPADGLFVSGFSVSIDESSLTGESEPVMVTSQTPFLLSGTKVQDGSCTMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFSVITFVVLVKGLMGKKINEGRFWWWSSEDCLEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVNEVANNKVFEKLPDLALKLLLQSIFNNTGGEVVVNKMGKRGILGTPTESAILEFGLSLGGEPQAEREKCQLIKVEPFNSEKKRMGVVVKLHDGGGFRAHCKGASEIILAACDKVINSNGEIVSLDQEASNYLSKTINQFASEALRTLCLAYMELENGFSSEEHIPSSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITKNSGGVV | 674 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc1567g00002 | 674 | Gene3D | - | 161 | 442 | - | - | |
| Stsc1567g00002 | 674 | Gene3D | - | 443 | 667 | IPR023214 | - | |
| Stsc1567g00002 | 674 | PANTHER | CATION TRANSPORTING ATPASE | 59 | 667 | - | - | |
| Stsc1567g00002 | 674 | Pfam | Cation transport ATPase (P-type) | 506 | 583 | - | - | |
| Stsc1567g00002 | 674 | Pfam | E1-E2 ATPase | 230 | 424 | - | - | |
| Stsc1567g00002 | 674 | SMART | Cation_ATPase_N_a_2 | 108 | 183 | IPR004014 | - | |
| Stsc1567g00002 | 674 | NCBIfam | HAD-IC family P-type ATPase | 379 | 471 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Stsc1567g00002 | 674 | PRINTS | Sodium/potassium-transporting ATPase signature | 196 | 216 | - | - | |
| Stsc1567g00002 | 674 | PRINTS | Sodium/potassium-transporting ATPase signature | 439 | 460 | - | - | |
| Stsc1567g00002 | 674 | PRINTS | Sodium/potassium-transporting ATPase signature | 567 | 585 | - | - | |
| Stsc1567g00002 | 674 | Pfam | Cation transporter/ATPase, N-terminus | 110 | 178 | IPR004014 | - | |
| Stsc1567g00002 | 674 | PRINTS | P-type cation-transporting ATPase superfamily signature | 446 | 460 | - | - | |
| Stsc1567g00002 | 674 | PRINTS | P-type cation-transporting ATPase superfamily signature | 642 | 653 | - | - | |
| Stsc1567g00002 | 674 | PRINTS | P-type cation-transporting ATPase superfamily signature | 277 | 291 | - | - | |
| Stsc1567g00002 | 674 | SUPERFAMILY | Calcium ATPase, transduction domain A | 232 | 326 | IPR008250 | - | |
| Stsc1567g00002 | 674 | FunFam | Calcium-transporting ATPase | 456 | 649 | - | - | |
| Stsc1567g00002 | 674 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 452 | 654 | IPR023299 | GO:0000166 | |
| Stsc1567g00002 | 674 | Gene3D | - | 133 | 329 | - | - | |
| Stsc1567g00002 | 674 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 448 | 454 | IPR018303 | - | |
| Stsc1567g00002 | 674 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 110 | 440 | IPR023298 | - | |
| Stsc1567g00002 | 674 | Gene3D | - | 456 | 649 | IPR023299 | GO:0000166 | |
| Stsc1567g00002 | 674 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 102 | 667 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Stsc1567g00002 | 674 | Gene3D | - | 18 | 68 | - | - | |
| Stsc1567g00002 | 674 | FunFam | Calcium-transporting ATPase | 209 | 329 | - | - | |
| Stsc1567g00002 | 674 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 50 | IPR024750 | GO:0005516 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc1567g00002 | Stsc-Chr1567 | 4795 | 11491 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc1567g00002 | 1 | 667 | Primary Pumps ATPases | AT4G37640 | 75.444 | 0.0 | 1025 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc1567g00002 | K01537 | - | gmx:100776926 | 1095.11 |