Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1567g00001 ATGGCTAGGTCCTCACCTTTGGATAAGCATACATTGGTGAAACAGCTGCGTACAACTTTTGGGGAGGTTGTTGCTGTAACTGGTGATGGAACAAATGATGCCCCAGCCCTTCATGAAGCTGATATTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCCAAGGAAAGTGCAGATGTCATAATTTTAGACGATAATTTCTCCACAATAGTCACAGTAGCAAAATGGGGACGTTCAGTTTACATAAATATTCAAAAATTTGTACAGTTTCAGCTTACTGTTAACGTGGTAGCATTACTAGTGAACTTCACGTCAGCTTGTATCACAGGAAGTGCACCACTAACGGCCGTTCAACTATTGTGGGTGAACATGATAATGGACACATTGGGAGCACTTGCACTTGCAACGGAGCCTCCGAATGATGATTTAATGAAGCGTCCACCTGTTGGTAGGAAAGGAGATTTCATCAGCAATGTCATGTGGAGAAATATCTTAGGACAATCAGTGTATCAGTTTGTTGTCATATGGTTTCTTCAGACTGTTGGAAGATGGTTCTTTCTTTGGGGCCCAAATCCTGATGTTGTCTTAAACACACTTATTTTCAACACATTTGTCTTTTGTCAGGTTTTCAATGAGATAAACTCTCGAGAAATGGAGGAAGTAGATGTGTTAAAGGGCATGATGGAAAACCAGGTGTTTGTGGCTGTGATTAGTTGCACGGTTGTGTTTCAAATCATAATAGTTGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCTCGTTTGTACAATGGCTCTTTTGCTTAGGGGTTGGGTATATGGGCATGCCTATTGCAGCAAAATTAAAGGAGATCAATGTTGAATAA 867 0.4118 MARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACITGSAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRPPVGRKGDFISNVMWRNILGQSVYQFVVIWFLQTVGRWFFLWGPNPDVVLNTLIFNTFVFCQVFNEINSREMEEVDVLKGMMENQVFVAVISCTVVFQIIIVEYLGTFANTTPLSFVQWLFCLGVGYMGMPIAAKLKEINVE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1567g00001 288 FunFam Calcium-transporting ATPase 44 288 - -
Stsc1567g00001 288 PANTHER CATION TRANSPORTING ATPASE 1 286 - -
Stsc1567g00001 288 Pfam Cation transporting ATPase, C-terminus 112 280 IPR006068 -
Stsc1567g00001 288 PRINTS P-type cation-transporting ATPase superfamily signature 27 46 - -
Stsc1567g00001 288 PRINTS P-type cation-transporting ATPase superfamily signature 51 63 - -
Stsc1567g00001 288 NCBIfam HAD-IC family P-type ATPase 1 114 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc1567g00001 288 SUPERFAMILY Calcium ATPase, transmembrane domain M 77 283 IPR023298 -
Stsc1567g00001 288 Gene3D - 40 287 - -
Stsc1567g00001 288 Pfam haloacid dehalogenase-like hydrolase 13 67 - -
Stsc1567g00001 288 SUPERFAMILY HAD-like 2 75 IPR036412 -
Stsc1567g00001 288 PRINTS H+-transporting ATPase (proton pump) signature 59 84 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc1567g00001 288 PRINTS H+-transporting ATPase (proton pump) signature 27 43 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1567g00001 Stsc-Chr1567 301 3325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1567g00001 1 287 Primary Pumps ATPases AT4G37640 81.250 1.48e-165 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1567g00001 K01537 - gmx:100776926 511.531