Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc156641g00001 ATGTTTGGGAGGGCGCCAAAGAAGAGCGATAACACCAAGTACTATGAGATCCTTGGAGTATCGAAGGACTCTTCTCAGGACGATTTGAAGAAGGCTTACAAGAAAGCTGCCATCAAGAATCATCCTGACAAAGGAGGTGACCCTGAGAAGTTTAAAGAGCTAGCACATGCTTATGAGGTGCTGAGTGATCCAGAGAAGCGTGAGATTTATGATCAATATGGTGAAGACGCACTTAAGGAAGGAATGGGTGGCGGTGGCGGAGGCCATGATCCTTTTGATATCTTCCAGTCTTTCTTTGGGGGGAGTGCATTTGGCTCCGGTGGTGGCAGTAGAGGACGGAGGCAGAGACGCGGAGAGGATGTGGTTCACCCCCTGAAGGTCTCTTTGGAGGACCTTTACCTTGGGACTTCCAAGAAGCTCTCGCTTTCACGGAATGTCTTGTGCTCTAAATGCAACGGGAAAGGGTCGAAATCTGGAGCTTCAATGAAATGTGCTGGCTGTCAAGGTACTGGTATGAAGGTTTCCATTAGACATCTTGGCCCCTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGCAAGGGTACTGGAGAAACAATCAATGAGAAAGACCGGTGCCCACAATGCAAGGGCGAGAAGGTTGTCCAAGAGAAGAAAGTGCTCGAGGTTCATGTGGAGAAGGGAATGCGGAACGGGCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCA 735 0.4884 MFGRAPKKSDNTKYYEILGVSKDSSQDDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSAFGSGGGSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINEKDRCPQCKGEKVVQEKKVLEVHVEKGMRNGQKITFPGEADEA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc156641g00001 245 CDD DnaJ 14 63 IPR001623 -
Stsc156641g00001 245 Gene3D DnaJ domain 10 109 IPR036869 -
Stsc156641g00001 245 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 243 IPR008971 GO:0006457|GO:0051082
Stsc156641g00001 245 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 244 IPR044713 GO:0006457|GO:0030544
Stsc156641g00001 245 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Stsc156641g00001 245 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Stsc156641g00001 245 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Stsc156641g00001 245 FunFam dnaJ protein homolog 10 110 - -
Stsc156641g00001 245 SMART dnaj_3 12 66 IPR001623 -
Stsc156641g00001 245 FunFam DnaJ subfamily A member 2 148 214 - -
Stsc156641g00001 245 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Stsc156641g00001 245 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Stsc156641g00001 245 Gene3D - 148 214 - -
Stsc156641g00001 245 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Stsc156641g00001 245 PRINTS DnaJ domain signature 15 33 IPR001623 -
Stsc156641g00001 245 PRINTS DnaJ domain signature 46 66 IPR001623 -
Stsc156641g00001 245 PRINTS DnaJ domain signature 66 85 IPR001623 -
Stsc156641g00001 245 Pfam DnaJ C terminal domain 122 243 IPR002939 -
Stsc156641g00001 245 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
Stsc156641g00001 245 Gene3D - 110 245 - -
Stsc156641g00001 245 Pfam DnaJ domain 13 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc156641g00001 Stsc-Chr156641 55 1475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc156641g00001 14 73 C2H2 Transcription Factor Family AT1G74250 46.377 2.37e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc156641g00001 K09503 - qsu:112040750 413.69