Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc155g00008 ATGGAGATAGAAGCAGCAACAAGTGGTAGTAGCAATAGTAGTGGGCTTGATAGAGGAAGCTACTTAGCTTGGGAAGATCTAAGAGTTGTTCTTCCAAATTTTGGAAAAGGACCAACTAAGAGGTTGCTTAATGGTCTCAATGGTTATGCTGAACCTGGAAGAATCATGGCTATTATGGGCCCTTCTGGCTCTGGAAAATCCACTCTCCTTGATTCACTTGCAGGTAGGCTCTCAAAAAATGTGGTCATGACAGGCAATGTTATTCTCAATGGGAAGAAGAAAAACCTAGGCTATGGTTTTGTTGCATACGTAACACAAGAAGATGTGCTGCTTGGAACACTAACAGTGAAAGAAACGATATCGTATTCAGCAAATCTGCGTCTTCCAACATCAATGACGAAAGAAGAAGTTGAAAGCATTGTTGAAGGAACCATCATAGAGATGGGACTCCAAGACTGTGCTGACAGGTTAATCGGAAACTGGCACCTGAGAGGGATAAGCGGCGGGGAGAAGAAGAGGCTGAGCATTGCACTTGAGATCCTGACAAGGCCAAGCTTGCTGTTTCTTGATGAACCCACCAGTGGACTCGACAGCGCTTCCGCCTTCTTCGTCGTTCAGACTCTCCGTAATGTGGCGCGTGATGGACGCACTGTCATCTCCTCCATTCACCAGCCTAGCAGCGAGGTCTTTGCTCTCTTTGATGACCTTTTCTTGCTCTCTGGGGGCGAAACTGTTTATTTTGGAGAAGCTAAAATGGCCGTTGAGTTTTTTGCTGAAGCCGGATTCCCTTGTCCACGTAAAAGAAATCCTTCTGATCACTTCCTAAGATGCATCAATTCTGACTTTGATGTTGTCACAGCTACACTCAAAGGATCTCAGAGAATTCATGATGTTCCAAATTCAGCAGATCCTTTCATGAATATGGCCACAGCACAAATTAAGTCTATGCTGGTTGACAGATATAGGCGCTCAGCATATGCAAAAAGAGCAAAGGACAGGGTTCAAGAACTATCTACCAATGATGGGCTTGAAAATGAGCCACAAACTGGAAGTCAAGCTACTTGGTGGAAGCAACTGTGCACATTGACAAAGAGATCATTTGTCAACATGTGTAGAGATGTTGGTTACTACTGGTTGAGGATCATAATCTATATCATTGTTTCAATTTGTGTTGGAACTATCTATTTTGATATTGGTTATAGCTATACCTCAATCCTAGCTCGTGGTGCCTGTGGTGCATTCATCTCTGGCTTCATGACATTCATGTCCATTGGAGGCTTCCCATCATTTATTGAAGAAATGAAGGTTTTCTATAAAGAAAGGCGTAATGGATATTATGGAGTTGCAGCATATATTCTAGGAAACTTCCTATCATCTTTCCCATTCTTGGTTGCAATTGCTTTAACTACAAGCACCATCACATACAACATGGTCAAATTCAGGCCAGGTGTCATTCACTTTGTGTTCTTCGCTCTCAACATCTATGGTTGCATCTCTGTCATTGAGAGCCTCATGATGGTTGTAGCTTCACTTGTTCCAAATTTCCTTATGGGAATAATCACAGGAGCTGGAATAATTGGAATCATGATGATGACCTCTGGATTCTTCAGGTTGCTATCTGATCTTCCAAAGCCAGTTTGGCGCTACCCAATTTCATATATCAGTTATGGTTCATGGGCAATTCAGGGTGCATACAAGAATGACTTGCTTGGGCTTGAGTTTGATCCTATGATACCTGGTGACCCAAAATTGACAGGAAAATATGTGATAACACACATGTTGGGAATTGAATTAAACCATTCAAAATGGTGGGACTTAGCAGCACTAATATTGATCCTCATAGCGTATAGGCTTTTGTTCTTCACCATACTCAAGCTGAAGGAAAGAGCCTCTCCAGTATTCAAAAACCTTTATGCAAAGAGAACCTTACATCAGCTTGAAAAGAGACCTTCATTCAGAAAAATGGGATCTTTCCCTTCCCTGAGGCATCAACCACTCCACTCTTTGTCTTCTCAAGAGGGTCTTAATTCTCCACTCCATTAG 2043 0.4234 MEIEAATSGSSNSSGLDRGSYLAWEDLRVVLPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVILNGKKKNLGYGFVAYVTQEDVLLGTLTVKETISYSANLRLPTSMTKEEVESIVEGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKMAVEFFAEAGFPCPRKRNPSDHFLRCINSDFDVVTATLKGSQRIHDVPNSADPFMNMATAQIKSMLVDRYRRSAYAKRAKDRVQELSTNDGLENEPQTGSQATWWKQLCTLTKRSFVNMCRDVGYYWLRIIIYIIVSICVGTIYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERRNGYYGVAAYILGNFLSSFPFLVAIALTTSTITYNMVKFRPGVIHFVFFALNIYGCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGSWAIQGAYKNDLLGLEFDPMIPGDPKLTGKYVITHMLGIELNHSKWWDLAALILILIAYRLLFFTILKLKERASPVFKNLYAKRTLHQLEKRPSFRKMGSFPSLRHQPLHSLSSQEGLNSPLH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc155g00008 680 CDD ABCG_EPDR 19 248 - -
Stsc155g00008 680 Pfam ABC-2 type transporter 358 567 IPR013525 GO:0016020|GO:0140359
Stsc155g00008 680 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Stsc155g00008 680 Pfam ABC transporter 43 194 IPR003439 GO:0005524
Stsc155g00008 680 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 266 IPR003439 GO:0005524
Stsc155g00008 680 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 16 649 - -
Stsc155g00008 680 Pfam ABC-2 type transporter 223 280 IPR043926 GO:0140359
Stsc155g00008 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 255 IPR027417 -
Stsc155g00008 680 Gene3D - 22 260 IPR027417 -
Stsc155g00008 680 FunFam ABC transporter G family member 11 16 260 - -
Stsc155g00008 680 SMART AAA_5 52 223 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc155g00008 Stsc-Chr155 60552 66852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc155g00008 38 235 Calmodulin-binding Proteins AT2G36910 31.797 2.42e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc155g00008 K05681 - gmx:100807692 1189.87